ID A6UKA3_SINMW Unreviewed; 296 AA.
AC A6UKA3;
DT 21-AUG-2007, integrated into UniProtKB/TrEMBL.
DT 21-AUG-2007, sequence version 1.
DT 27-MAR-2024, entry version 97.
DE SubName: Full=Helix-turn-helix-domain containing protein AraC type {ECO:0000313|EMBL:ABR64083.1};
GN OrderedLocusNames=Smed_5309 {ECO:0000313|EMBL:ABR64083.1};
OS Sinorhizobium medicae (strain WSM419) (Ensifer medicae).
OG Plasmid pSMED02 {ECO:0000313|EMBL:ABR64083.1,
OG ECO:0000313|Proteomes:UP000001108}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=366394 {ECO:0000313|EMBL:ABR64083.1, ECO:0000313|Proteomes:UP000001108};
RN [1] {ECO:0000313|Proteomes:UP000001108}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WSM419 {ECO:0000313|Proteomes:UP000001108};
RC PLASMID=Plasmid pSMED02 {ECO:0000313|Proteomes:UP000001108};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G.,
RA Richardson P.;
RT "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED02.";
RL Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABR64083.1, ECO:0000313|Proteomes:UP000001108}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WSM419 {ECO:0000313|EMBL:ABR64083.1,
RC ECO:0000313|Proteomes:UP000001108};
RC PLASMID=Plasmid pSMED02 {ECO:0000313|Proteomes:UP000001108};
RX PubMed=21304680; DOI=10.4056/sigs.43526;
RA Reeve W., Chain P., O'Hara G., Ardley J., Nandesena K., Brau L., Tiwari R.,
RA Malfatti S., Kiss H., Lapidus A., Copeland A., Nolan M., Land M.,
RA Hauser L., Chang Y.J., Ivanova N., Mavromatis K., Markowitz V.,
RA Kyrpides N., Gollagher M., Yates R., Dilworth M., Howieson J.;
RT "Complete genome sequence of the Medicago microsymbiont Ensifer
RT (Sinorhizobium) medicae strain WSM419.";
RL Stand. Genomic Sci. 2:77-86(2010).
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DR EMBL; CP000740; ABR64083.1; -; Genomic_DNA.
DR RefSeq; WP_011970192.1; NC_009621.1.
DR RefSeq; YP_001314016.1; NC_009621.1.
DR AlphaFoldDB; A6UKA3; -.
DR KEGG; smd:Smed_5309; -.
DR PATRIC; fig|366394.8.peg.1796; -.
DR eggNOG; COG1917; Bacteria.
DR eggNOG; COG2169; Bacteria.
DR HOGENOM; CLU_000445_88_9_5; -.
DR OrthoDB; 345413at2; -.
DR Proteomes; UP000001108; Plasmid pSMED02.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 2.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR InterPro; IPR013096; Cupin_2.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR018062; HTH_AraC-typ_CS.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR PANTHER; PTHR46796:SF6; BLL1074 PROTEIN; 1.
DR PANTHER; PTHR46796; HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED; 1.
DR Pfam; PF07883; Cupin_2; 1.
DR Pfam; PF12833; HTH_18; 1.
DR PRINTS; PR00032; HTHARAC.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 2.
DR SUPFAM; SSF51182; RmlC-like cupins; 1.
DR PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Plasmid {ECO:0000313|EMBL:ABR64083.1};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 192..290
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 296 AA; 33014 MW; 252125B44165EAB7 CRC64;
MKLSESKIVE RAIYRPSPSS IEGTPTRLHF FHAHPAIMLG PHWHAQVEVN YVMRGSMHYR
MADHDFRLHA GQMCLFWGGQ PHRMDESSDD SIYAGGHLPL VHFFRMRLPP AISAMLMGGA
TMLTSETDAA DDQNFPRWRN WAHSGDEVKA QHAVEELLLR LERMFMEPYT IVSSGKELRT
GSASASPSPG VVRMCDFIAA NFLDEIDAGD IAAAAGLHPK YAMNLFRKST GMTLIAYLTL
LRLSRAQAML MNGKESILQV AMDSGFGSVS AFNKAFRQIA GMPPSDFRRD IRATAR
//
