ID A7EEB1_SCLS1 Unreviewed; 819 AA.
AC A7EEB1;
DT 11-SEP-2007, integrated into UniProtKB/TrEMBL.
DT 11-SEP-2007, sequence version 1.
DT 24-JAN-2024, entry version 70.
DE RecName: Full=mRNA decay factor PAT1 domain-containing protein {ECO:0000259|Pfam:PF09770};
GN ORFNames=SS1G_03651 {ECO:0000313|EMBL:EDO01177.1};
OS Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold)
OS (Whetzelinia sclerotiorum).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes;
OC Helotiales; Sclerotiniaceae; Sclerotinia.
OX NCBI_TaxID=665079 {ECO:0000313|EMBL:EDO01177.1, ECO:0000313|Proteomes:UP000001312};
RN [1] {ECO:0000313|Proteomes:UP000001312}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 18683 / 1980 / Ss-1 {ECO:0000313|Proteomes:UP000001312};
RX PubMed=21876677; DOI=.1371/journal.pgen.1002230;
RA Amselem J., Cuomo C.A., van Kan J.A., Viaud M., Benito E.P., Couloux A.,
RA Coutinho P.M., de Vries R.P., Dyer P.S., Fillinger S., Fournier E.,
RA Gout L., Hahn M., Kohn L., Lapalu N., Plummer K.M., Pradier J.M.,
RA Quevillon E., Sharon A., Simon A., ten Have A., Tudzynski B., Tudzynski P.,
RA Wincker P., Andrew M., Anthouard V., Beever R.E., Beffa R., Benoit I.,
RA Bouzid O., Brault B., Chen Z., Choquer M., Collemare J., Cotton P.,
RA Danchin E.G., Da Silva C., Gautier A., Giraud C., Giraud T., Gonzalez C.,
RA Grossetete S., Guldener U., Henrissat B., Howlett B.J., Kodira C.,
RA Kretschmer M., Lappartient A., Leroch M., Levis C., Mauceli E.,
RA Neuveglise C., Oeser B., Pearson M., Poulain J., Poussereau N.,
RA Quesneville H., Rascle C., Schumacher J., Segurens B., Sexton A., Silva E.,
RA Sirven C., Soanes D.M., Talbot N.J., Templeton M., Yandava C., Yarden O.,
RA Zeng Q., Rollins J.A., Lebrun M.H., Dickman M.;
RT "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia
RT sclerotiorum and Botrytis cinerea.";
RL PLoS Genet. 7:E1002230-E1002230(2011).
CC -!- SUBCELLULAR LOCATION: Cytoplasm, P-body
CC {ECO:0000256|ARBA:ARBA00004201}.
CC -!- SIMILARITY: Belongs to the PAT1 family.
CC {ECO:0000256|ARBA:ARBA00009138}.
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DR EMBL; CH476624; EDO01177.1; -; Genomic_DNA.
DR RefSeq; XP_001595562.1; XM_001595512.1.
DR AlphaFoldDB; A7EEB1; -.
DR STRING; 665079.A7EEB1; -.
DR EnsemblFungi; EDO01177; EDO01177; SS1G_03651.
DR GeneID; 5491968; -.
DR KEGG; ssl:SS1G_03651; -.
DR VEuPathDB; FungiDB:sscle_09g074540; -.
DR eggNOG; KOG4592; Eukaryota.
DR HOGENOM; CLU_012622_1_0_1; -.
DR InParanoid; A7EEB1; -.
DR OMA; YLEHSGH; -.
DR OrthoDB; 2786412at2759; -.
DR Proteomes; UP000001312; Unassembled WGS sequence.
DR GO; GO:0000932; C:P-body; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0000290; P:deadenylation-dependent decapping of nuclear-transcribed mRNA; IBA:GO_Central.
DR GO; GO:0033962; P:P-body assembly; IBA:GO_Central.
DR InterPro; IPR039900; Pat1-like.
DR InterPro; IPR019167; PAT1_dom.
DR PANTHER; PTHR21551:SF0; PROTEIN ASSOCIATED WITH TOPO II RELATED-1, ISOFORM A; 1.
DR PANTHER; PTHR21551; TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1; 1.
DR Pfam; PF09770; PAT1; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000001312}.
FT DOMAIN 1..816
FT /note="mRNA decay factor PAT1"
FT /evidence="ECO:0000259|Pfam:PF09770"
FT REGION 1..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 99..243
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 282..312
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 476..521
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 44..65
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 99..133
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 199..213
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 220..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 282..296
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 819 AA; 91524 MW; DD74D934847E7700 CRC64;
MSFFGFDPSQ RPQERGHNTA APGFGQHADP FASLSGSGND NEAFDFEDTY DGLGDQLEET
GDDFNDDTFG AGAGDSIASK PVGKDFDFFG QTAKVSSAIS EEQMRYTRQQ PVVSRTTPTT
STFSQQRTSR PARTGYERYQ EPEYVPDMQV DANLWGVTPK QAPPKTATPP VAGTSAPSRK
MMSLEEVEAA MRAQAKKPSQ PQAPVQQQQM PPSQPQYQQP PPQQYQNFHP QAPQQQQQQQ
FPVQVSAPLQ LEQRQIPVEQ PIHILQRPQV PTSQVNVPSI PSQPAHMQNM NRFPGQPQGA
QRGHHHPHAS GNRHVITHPQ QLVNLSEEER AAFLLEDAKR AKRNHKIFLL SKDNGLMTPQ
DKNFITRIQL QQLVTATGNP NEHGIDSSLS EDFYYQVHSQ IRGGPRQNPH QPLSNFAQTY
LFQTGNRHGG MRRQARGGDN HVQRMEQQVQ RAVEAAKNKP KNKQLVIEGS LGKISFSNAK
TPKPLLNIKR TDSSETRPGQ SPNPRKANLA NVSGSNRKST LTDIENVYNT LMELEDHERS
KPRPLGHDEI NPQIAGMNQD WDERQQFLNK QLWRNLRIHE PIGATTVHPF IAFLSFNKGK
KAIPRVFRHI SDEQRATILT MIILHLDKLD VVRLAVPSPD GIQLSAETRE NIDLFQVTVM
SSLFGFLHDA DFQITTGVLG LILNLNIDLI ARTRIGLSLL TMILSRAEIT KQAGDVDERG
WSDWLSTHNA FFDALEPTLP EIFPGTVNTG EDVYVWQFLA AIGIGASPEQ QQRLVMAVKD
RVMETVGLAK TLPPAMSSQR LANVNLFMRS IGLDVELLA
//
