ID A8LPH3_DINSH Unreviewed; 323 AA.
AC A8LPH3;
DT 04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT 04-DEC-2007, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE SubName: Full=Transcriptional regulator {ECO:0000313|EMBL:ABV92296.1};
GN Name=deoR1 {ECO:0000313|EMBL:ABV92296.1};
GN OrderedLocusNames=Dshi_0550 {ECO:0000313|EMBL:ABV92296.1};
OS Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Dinoroseobacter.
OX NCBI_TaxID=398580 {ECO:0000313|EMBL:ABV92296.1, ECO:0000313|Proteomes:UP000006833};
RN [1] {ECO:0000313|Proteomes:UP000006833}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 16493 / NCIMB 14021 / DFL 12
RC {ECO:0000313|Proteomes:UP000006833};
RX PubMed=19741735; DOI=10.1038/ismej.2009.94;
RA Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I.,
RA Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C.,
RA Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W.,
RA Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T.,
RA Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S.,
RA Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A.,
RA Zech H., Simon M.;
RT "The complete genome sequence of the algal symbiont Dinoroseobacter shibae:
RT a hitchhiker's guide to life in the sea.";
RL ISME J. 4:61-77(2010).
CC -!- SIMILARITY: Belongs to the SorC transcriptional regulatory family.
CC {ECO:0000256|ARBA:ARBA00010466}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CP000830; ABV92296.1; -; Genomic_DNA.
DR RefSeq; WP_012177228.1; NC_009952.1.
DR AlphaFoldDB; A8LPH3; -.
DR STRING; 398580.Dshi_0550; -.
DR KEGG; dsh:Dshi_0550; -.
DR eggNOG; COG2390; Bacteria.
DR HOGENOM; CLU_054506_0_1_5; -.
DR OrthoDB; 9808171at2; -.
DR Proteomes; UP000006833; Chromosome.
DR GO; GO:0030246; F:carbohydrate binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 3.40.50.1360; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR037171; NagB/RpiA_transferase-like.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR007324; Sugar-bd_dom_put.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR34294:SF1; SORBITOL OPERON REGULATOR; 1.
DR PANTHER; PTHR34294; TRANSCRIPTIONAL REGULATOR-RELATED; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR Pfam; PF04198; Sugar-bind; 1.
DR SUPFAM; SSF100950; NagB/RpiA/CoA transferase-like; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000006833}.
FT DOMAIN 7..55
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT DOMAIN 67..319
FT /note="Sugar-binding"
FT /evidence="ECO:0000259|Pfam:PF04198"
SQ SEQUENCE 323 AA; 35273 MW; 7955AD1F7C44A054 CRC64;
MSRTIKLDQI DPEEQLLVRL AWACEFEGMT QAAAAKRFNV TRLRVNRALS EARRRGILRV
NIDSVFAAAA ELEWNLERRF RLKQAVVVPS PQDARSVTQL VSAGLGGLLG ELLRDKEITH
FGMSWGNTLN MATRHMQPLD RPDLEIVSIM GGVSRGSDVN GYEITTRLAD LCNAEHSFFT
APLYAGSAES RTLFVEQDVI RDMLEKIRSC QAIALATGDL ESSLLVQDAL PSGITADELR
ALGGVGDITG HILDAKGELI DHPLNQRVIG MSLDDMAKID NVILAAGGLH KVAVINAALT
RGFVDTLVTD EYTAVALLED RAK
//
