GenomeNet

Database: UniProt
Entry: ATG16_ARATH
LinkDB: ATG16_ARATH
Original site: ATG16_ARATH 
ID   ATG16_ARATH             Reviewed;         509 AA.
AC   Q6NNP0; Q9FGS2;
DT   11-NOV-2015, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   24-JAN-2024, entry version 135.
DE   RecName: Full=Autophagy-related protein 16 {ECO:0000305};
GN   Name=ATG16 {ECO:0000303|PubMed:17204848};
GN   OrderedLocusNames=At5g50230 {ECO:0000312|Araport:AT5G50230};
GN   ORFNames=K6A12.9 {ECO:0000312|EMBL:BAB09394.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA   Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT   features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT   clones.";
RL   DNA Res. 7:31-63(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (JAN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RA   Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT   "Arabidopsis ORF clones.";
RL   Submitted (DEC-2004) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENE FAMILY, AND NOMENCLATURE.
RX   PubMed=17204848; DOI=10.4161/auto.3595;
RA   Meijer W.H., van der Klei I.J., Veenhuis M., Kiel J.A.K.W.;
RT   "ATG genes involved in non-selective autophagy are conserved from yeast to
RT   man, but the selective Cvt and pexophagy pathways also require organism-
RT   specific genes.";
RL   Autophagy 3:106-116(2007).
CC   -!- FUNCTION: May play a role in autophagy. {ECO:0000250|UniProtKB:Q676U5}.
CC   -!- INTERACTION:
CC       Q6NNP0; Q84MB2: TIFY8; NbExp=3; IntAct=EBI-25517622, EBI-4426557;
CC       Q6NNP0; Q5CCK4: VAL2; NbExp=3; IntAct=EBI-25517622, EBI-15193683;
CC   -!- SIMILARITY: Belongs to the WD repeat ATG16 family. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAB09394.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AB024031; BAB09394.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002688; AED95914.1; -; Genomic_DNA.
DR   EMBL; BT011244; AAR92280.1; -; mRNA.
DR   EMBL; BT020329; AAV85684.1; -; mRNA.
DR   RefSeq; NP_199834.2; NM_124402.4.
DR   AlphaFoldDB; Q6NNP0; -.
DR   SMR; Q6NNP0; -.
DR   IntAct; Q6NNP0; 2.
DR   STRING; 3702.Q6NNP0; -.
DR   PaxDb; 3702-AT5G50230-1; -.
DR   ProteomicsDB; 246545; -.
DR   EnsemblPlants; AT5G50230.1; AT5G50230.1; AT5G50230.
DR   GeneID; 835088; -.
DR   Gramene; AT5G50230.1; AT5G50230.1; AT5G50230.
DR   KEGG; ath:AT5G50230; -.
DR   Araport; AT5G50230; -.
DR   TAIR; AT5G50230; ATG16.
DR   eggNOG; KOG0288; Eukaryota.
DR   HOGENOM; CLU_000288_57_10_1; -.
DR   InParanoid; Q6NNP0; -.
DR   OMA; GRPCISP; -.
DR   OrthoDB; 458014at2759; -.
DR   PhylomeDB; Q6NNP0; -.
DR   PRO; PR:Q6NNP0; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q6NNP0; baseline and differential.
DR   Genevisible; Q6NNP0; AT.
DR   GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR   GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR   GO; GO:0006807; P:nitrogen compound metabolic process; IEA:UniProt.
DR   GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR   GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR   CDD; cd22887; Atg16_CCD; 1.
DR   CDD; cd00200; WD40; 1.
DR   Gene3D; 1.20.5.170; -; 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 3.
DR   InterPro; IPR045160; ATG16.
DR   InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR   InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR   PANTHER; PTHR19878:SF8; AUTOPHAGY-RELATED 16, ISOFORM F; 1.
DR   Pfam; PF08614; ATG16; 1.
DR   Pfam; PF00400; WD40; 5.
DR   PRINTS; PR00320; GPROTEINBRPT.
DR   SMART; SM00320; WD40; 7.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 3.
DR   PROSITE; PS50082; WD_REPEATS_2; 6.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE   1: Evidence at protein level;
KW   Autophagy; Protein transport; Reference proteome; Repeat; Transport;
KW   WD repeat.
FT   CHAIN           1..509
FT                   /note="Autophagy-related protein 16"
FT                   /id="PRO_0000434628"
FT   REPEAT          223..262
FT                   /note="WD 1"
FT                   /evidence="ECO:0000255"
FT   REPEAT          265..304
FT                   /note="WD 2"
FT                   /evidence="ECO:0000255"
FT   REPEAT          307..347
FT                   /note="WD 3"
FT                   /evidence="ECO:0000255"
FT   REPEAT          349..388
FT                   /note="WD 4"
FT                   /evidence="ECO:0000255"
FT   REPEAT          391..430
FT                   /note="WD 5"
FT                   /evidence="ECO:0000255"
FT   REPEAT          437..478
FT                   /note="WD 6"
FT                   /evidence="ECO:0000255"
FT   REPEAT          480..509
FT                   /note="WD 7"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   509 AA;  56427 MW;  5B178B57AB66F090 CRC64;
     MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ
     CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL TQRREDCTRL QEELEEKTKT
     VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK
     LKANGLETLA RQQVDGIVRR NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL
     FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
     VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS
     IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS LSRNGNRILT SGRDNVHNVF
     DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ
     TSPILCCSWS GIGKPLASAD KNGYVCTWT
//
DBGET integrated database retrieval system