ID RSMF_SHEHH Reviewed; 479 AA.
AC B0TIZ6;
DT 20-MAY-2008, integrated into UniProtKB/Swiss-Prot.
DT 08-APR-2008, sequence version 1.
DT 01-MAY-2013, entry version 37.
DE RecName: Full=Ribosomal RNA small subunit methyltransferase F;
DE EC=2.1.1.178;
DE AltName: Full=16S rRNA m5C1407 methyltransferase;
DE AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase RsmF;
GN Name=rsmF; OrderedLocusNames=Shal_2372;
OS Shewanella halifaxensis (strain HAW-EB4).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=458817;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=HAW-EB4;
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E.,
RA Tice H., Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T.,
RA Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Kim E., Zhao J.-S., Richardson P.;
RT "Complete sequence of Shewanella halifaxensis HAW-EB4.";
RL Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Specifically methylates the cytosine at position 1407
CC (m5C1407) of 16S rRNA (By similarity).
CC -!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + cytosine(1407) in
CC 16S rRNA = S-adenosyl-L-homocysteine + 5-methylcytosine(1407) in
CC 16S rRNA.
CC -!- SUBCELLULAR LOCATION: Cytoplasm (Potential).
CC -!- SIMILARITY: Belongs to the methyltransferase superfamily. RsmB/NOP
CC family.
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DR EMBL; CP000931; ABZ76931.1; -; Genomic_DNA.
DR RefSeq; YP_001674590.1; NC_010334.1.
DR ProteinModelPortal; B0TIZ6; -.
DR SMR; B0TIZ6; 4-474.
DR STRING; 458817.Shal_2372; -.
DR EnsemblBacteria; ABZ76931; ABZ76931; Shal_2372.
DR GeneID; 5905331; -.
DR KEGG; shl:Shal_2372; -.
DR PATRIC; 23507547; VBISheHal24697_2488.
DR eggNOG; COG0144; -.
DR HOGENOM; HOG000218115; -.
DR KO; K11392; -.
DR OMA; VANEYSA; -.
DR ProtClustDB; PRK11933; -.
DR BioCyc; SHAL458817:GH1X-2464-MONOMER; -.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016434; F:rRNA (cytosine) methyltransferase activity; IEA:HAMAP.
DR HAMAP; MF_01579; 16SrRNA_methyltr_F; 1; -.
DR InterPro; IPR001678; Fmu/NOL1/Nop2p.
DR InterPro; IPR011023; Nop2p.
DR InterPro; IPR023267; RCMT.
DR InterPro; IPR023545; rRNA_ssu_MeTfrase_F.
DR Pfam; PF01189; Nol1_Nop2_Fmu; 1.
DR PRINTS; PR02008; RCMTFAMILY.
DR TIGRFAMs; TIGR00446; nop2p; 1.
DR PROSITE; PS01153; NOL1_NOP2_SUN; FALSE_NEG.
PE 3: Inferred from homology;
KW Complete proteome; Cytoplasm; Methyltransferase; RNA-binding;
KW rRNA processing; S-adenosyl-L-methionine; Transferase.
FT CHAIN 1 479 Ribosomal RNA small subunit
FT methyltransferase F.
FT /FTId=PRO_1000087931.
FT REGION 128 134 S-adenosyl-L-methionine binding (By
FT similarity).
FT ACT_SITE 250 250 Nucleophile (Potential).
FT BINDING 152 152 S-adenosyl-L-methionine (By similarity).
FT BINDING 179 179 S-adenosyl-L-methionine (By similarity).
FT BINDING 197 197 S-adenosyl-L-methionine (By similarity).
SQ SEQUENCE 479 AA; 53619 MW; 99D2600AFDA28E6E CRC64;
MAHFNQNFLD SIERDLPSHL SMEDFIAYSN KPLRLSIRVN TLKISTENFI DLMSAKGWSF
DPIPWCNQGF WVTISSDLQL GNTIEHLQGL FYIQEASSML PPTALFDSHA DNENDLSQFA
QTRVLDMASA PGSKTTQIAA LMNNQGLLVA NEYSASRVKV LHANVARMGV SNCALTHFDA
RVFGEYLFET FDSVLLDAPC SGEGTIRKDP DALKNWDNND NKGIVDTQKA LIESAFLALK
VGGCLVYSTC ALSRQENQDV CHHLKTAFGE AVEFAALTEL FPDADKACTE EGFLHVWPQI
YDSEGFFVAK IRKVSAVERT LPEPKMQKNF PFTAAKTKQI EELTAYFEDS FAITLPTDAE
IMVRDLEFWL FPKAVMPLIG KMRFQRIGIK LADALKKGYK VRHEAILALS SPTRFELSDE
QAKEFLMGRD ISLVEKVKPQ GEVIVSYASN PLGVAKHLGN KLKNNLPRDL VKDKIALYQ
//
