ID RIMK_XYLFM Reviewed; 301 AA.
AC B0U5E6;
DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot.
DT 08-APR-2008, sequence version 1.
DT 01-MAY-2013, entry version 41.
DE RecName: Full=Ribosomal protein S6 modification protein;
GN Name=rimK; OrderedLocusNames=Xfasm12_2103;
OS Xylella fastidiosa (strain M12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
OC Xanthomonadaceae; Xylella.
OX NCBI_TaxID=405440;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=M12;
RX PubMed=20601474; DOI=10.1128/JB.00651-10;
RA Chen J., Xie G., Han S., Chertkov O., Sims D., Civerolo E.L.;
RT "Whole genome sequences of two Xylella fastidiosa strains (M12 and
RT M23) causing almond leaf scorch disease in California.";
RL J. Bacteriol. 192:4534-4534(2010).
CC -!- FUNCTION: Responsible for the addition of glutamate residues to
CC the C-terminus of ribosomal protein S6 (By similarity).
CC -!- COFACTOR: Binds 2 magnesium or manganese ions per subunit (By
CC similarity).
CC -!- SIMILARITY: Belongs to the RimK family.
CC -!- SIMILARITY: Contains 1 ATP-grasp domain.
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DR EMBL; CP000941; ACA12964.1; -; Genomic_DNA.
DR RefSeq; YP_001776594.1; NC_010513.1.
DR STRING; 405440.Xfasm12_2103; -.
DR EnsemblBacteria; ACA12964; ACA12964; Xfasm12_2103.
DR GeneID; 6120308; -.
DR KEGG; xfm:Xfasm12_2103; -.
DR PATRIC; 24141059; VBIXylFas124301_2467.
DR eggNOG; COG0189; -.
DR HOGENOM; HOG000293092; -.
DR KO; K05844; -.
DR OMA; CREPRLY; -.
DR ProtClustDB; CLSK451700; -.
DR GO; GO:0005524; F:ATP binding; IEA:HAMAP.
DR GO; GO:0000287; F:magnesium ion binding; IEA:HAMAP.
DR GO; GO:0030145; F:manganese ion binding; IEA:HAMAP.
DR GO; GO:0006464; P:cellular protein modification process; IEA:InterPro.
DR GO; GO:0006412; P:translation; IEA:HAMAP.
DR Gene3D; 3.30.470.20; -; 1.
DR Gene3D; 3.40.50.20; -; 1.
DR HAMAP; MF_01552; RimK; 1; -.
DR InterPro; IPR011761; ATP-grasp.
DR InterPro; IPR013651; ATP-grasp_RimK-type.
DR InterPro; IPR013816; ATP_grasp_subdomain_2.
DR InterPro; IPR016185; PreATP-grasp_dom.
DR InterPro; IPR023533; Ribosomal_S6_modifier_RimK.
DR InterPro; IPR004666; RpS6_RimK/Lys_biosynth_LsyX.
DR Pfam; PF08443; RimK; 1.
DR TIGRFAMs; TIGR00768; rimK_fam; 1.
DR PROSITE; PS50975; ATP_GRASP; 1.
PE 3: Inferred from homology;
KW ATP-binding; Complete proteome; Magnesium; Manganese; Metal-binding;
KW Nucleotide-binding; Protein biosynthesis.
FT CHAIN 1 301 Ribosomal protein S6 modification
FT protein.
FT /FTId=PRO_1000146955.
FT DOMAIN 104 287 ATP-grasp.
FT NP_BIND 177 187 ATP (By similarity).
FT METAL 248 248 Magnesium or manganese 1 (By similarity).
FT METAL 260 260 Magnesium or manganese 1 (By similarity).
FT METAL 260 260 Magnesium or manganese 2 (By similarity).
FT METAL 262 262 Magnesium or manganese 2 (By similarity).
FT BINDING 141 141 ATP (By similarity).
FT BINDING 203 203 ATP (By similarity).
SQ SEQUENCE 301 AA; 32678 MW; 902ECC728AA0C77F CRC64;
MKLAILSRNS KLYSTRRLVE VARMRGHTVR ILDPLRCYMR IVVGDFSMHY KGKPIDGYHA
VIPRIGVSVT HYATAVLRQF ELMGTYSPNP SDAILRSRDK LRAHQLLAAQ GIDMPMTVFG
DNPDDTQDLL SMLGPPPHVV KLNEGAQGKG VILSEKNSAS RGLVEALRGL YANFLVQEFI
SEADSADLRC FVVGNQVVAT MRRQAADGDF RSNLHLGGSA TAATASEEEQ EVAVRSAHAL
GLTVAGVDLI RSRRGPLVLE VNPTPGLEGI EATSGTNVAI KIVHHVEEML ATICSSNICQ
P
//
