ID B0WCW8_CULQU Unreviewed; 336 AA.
AC B0WCW8;
DT 08-APR-2008, integrated into UniProtKB/TrEMBL.
DT 08-APR-2008, sequence version 1.
DT 24-JAN-2024, entry version 87.
DE SubName: Full=Apg16L alpha {ECO:0000313|EMBL:EDS43928.1};
GN Name=6036505 {ECO:0000313|EnsemblMetazoa:CPIJ005071-PA};
GN ORFNames=CpipJ_CPIJ005071 {ECO:0000313|EMBL:EDS43928.1};
OS Culex quinquefasciatus (Southern house mosquito) (Culex pungens).
OC Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota;
OC Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae;
OC Culicinae; Culicini; Culex; Culex.
OX NCBI_TaxID=7176;
RN [1] {ECO:0000313|EMBL:EDS43928.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JHB {ECO:0000313|EMBL:EDS43928.1};
RG The Broad Institute Genome Sequencing Platform;
RA Atkinson P.W., Hemingway J., Christensen B.M., Higgs S., Kodira C.,
RA Hannick L., Megy K., O'Leary S., Pearson M., Haas B.J., Mauceli E.,
RA Wortman J.R., Lee N.H., Guigo R., Stanke M., Alvarado L., Amedeo P.,
RA Antoine C.H., Arensburger P., Bidwell S.L., Crawford M., Camaro F.,
RA Devon K., Engels R., Hammond M., Howarth C., Koehrsen M., Lawson D.,
RA Montgomery P., Nene V., Nusbaum C., Puiu D., Romero-Severson J.,
RA Severson D.W., Shumway M., Sisk P., Stolte C., Zeng Q., Eisenstadt E.,
RA Fraser-Liggett C., Strausberg R., Galagan J., Birren B., Collins F.H.;
RT "Annotation of Culex pipiens quinquefasciatus.";
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblMetazoa:CPIJ005071-PA}
RP IDENTIFICATION.
RC STRAIN=JHB {ECO:0000313|EnsemblMetazoa:CPIJ005071-PA};
RG EnsemblMetazoa;
RL Submitted (FEB-2021) to UniProtKB.
CC -!- SIMILARITY: Belongs to the WD repeat ATG16 family.
CC {ECO:0000256|ARBA:ARBA00009271}.
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DR EMBL; DS231891; EDS43928.1; -; Genomic_DNA.
DR RefSeq; XP_001846552.1; XM_001846500.1.
DR AlphaFoldDB; B0WCW8; -.
DR STRING; 7176.B0WCW8; -.
DR EnsemblMetazoa; CPIJ005071-RA; CPIJ005071-PA; CPIJ005071.
DR KEGG; cqu:CpipJ_CPIJ005071; -.
DR VEuPathDB; VectorBase:CPIJ005071; -.
DR VEuPathDB; VectorBase:CQUJHB016428; -.
DR eggNOG; KOG0288; Eukaryota.
DR HOGENOM; CLU_000288_57_10_1; -.
DR InParanoid; B0WCW8; -.
DR OMA; ITKCLGR; -.
DR OrthoDB; 458014at2759; -.
DR Proteomes; UP000002320; Unassembled WGS sequence.
DR GO; GO:0000045; P:autophagosome assembly; IEA:InterPro.
DR GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR GO; GO:0006807; P:nitrogen compound metabolic process; IEA:UniProt.
DR GO; GO:0044238; P:primary metabolic process; IEA:UniProt.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR045160; ATG16.
DR InterPro; IPR013923; Autophagy-rel_prot_16_dom.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR19878; AUTOPHAGY PROTEIN 16-LIKE; 1.
DR PANTHER; PTHR19878:SF8; AUTOPHAGY-RELATED 16, ISOFORM F; 1.
DR Pfam; PF08614; ATG16; 1.
DR Pfam; PF00400; WD40; 2.
DR SMART; SM00320; WD40; 2.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002320};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT DOMAIN 18..184
FT /note="Autophagy-related protein 16"
FT /evidence="ECO:0000259|Pfam:PF08614"
FT REPEAT 240..277
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 284..325
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 336 AA; 37342 MW; 1B72ABA593F8B8F8 CRC64;
MTRKLFYQTK TPLDITDNRL FDTATKLRQE NLELKIDKKI RDSSAGLVGG GAGSDHLQLT
AITNAQIQSL EKKCLAQQEE LTELHKRKGE HSQMIITLNQ KLTECQRALG EKERALVEQC
SMNVSLREEL DKLRAAHTTV LDEQPFLQLR ANAAEEKLRA VQDENNKLLG LLMEYKSRDA
EVMNRENDKF LKLKKAQIES ELAGAIRDIA GPSGLGGGGG VMDRFDFGSD GFPEGIEFKF
DVHDGEVNAV RWSPVEGVVA TGGADRKVKL WDVSKGKWEP RGSLVGSNQG INSVEFDSTG
SHILAASNDF ASRVWSVADQ RLRKGARRSE LILMSY
//