ID B1XVH2_POLNS Unreviewed; 755 AA.
AC B1XVH2;
DT 20-MAY-2008, integrated into UniProtKB/TrEMBL.
DT 20-MAY-2008, sequence version 1.
DT 27-MAR-2024, entry version 64.
DE SubName: Full=Lysine decarboxylase {ECO:0000313|EMBL:ACB44349.1};
DE EC=4.1.1.18 {ECO:0000313|EMBL:ACB44349.1};
GN OrderedLocusNames=Pnec_1204 {ECO:0000313|EMBL:ACB44349.1};
OS Polynucleobacter necessarius subsp. necessarius (strain STIR1).
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Burkholderiaceae; Polynucleobacter.
OX NCBI_TaxID=452638 {ECO:0000313|EMBL:ACB44349.1};
RN [1] {ECO:0000313|EMBL:ACB44349.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=STIR1 {ECO:0000313|EMBL:ACB44349.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Kim E., Hahn M., Richardson P.;
RT "Complete sequence of Polynucleobacter necessarius STIR1.";
RL Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
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DR EMBL; CP001010; ACB44349.1; -; Genomic_DNA.
DR AlphaFoldDB; B1XVH2; -.
DR STRING; 452638.Pnec_1204; -.
DR KEGG; pne:Pnec_1204; -.
DR eggNOG; COG1982; Bacteria.
DR HOGENOM; CLU_014292_3_0_4; -.
DR OrthoDB; 9761189at2; -.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0008923; F:lysine decarboxylase activity; IEA:UniProtKB-EC.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:ACB44349.1};
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1}.
FT DOMAIN 391..405
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 396
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 755 AA; 85696 MW; 433082C751ECC487 CRC64;
MKFRFPIIII DEDFRSENIS GSGIRDLAEA IENEGVEVIG LTSYGDLTSF AQQASRASTF
IVSIDDEEFD SDSEDHDLPA LNNLRAFITE VRKRNEDIPI FLYGETRTSR HMPNDILREL
HGFIHMNEDT PEFVARHIIR EAKVYLDSLA PPFFRALTNY ASEGSYSWHC PGHSGGVAFL
KSPVGRMFHQ FFGENMLRAD VCNAVEELGQ LLDHTGPVLQ SERNAARIFN ADHLFFVTNG
TSTSNKIVWH STVAPGDVVL VDRNCHKSVI HSITMMGAIP IFLMPTRNHL GIIGPIPKEE
FEWKNIKKKI DVNPFIKDKN VVPRVMTLTQ STYDGIVYNV EMIKEMLDGK VDSLHFDEAW
LPHAAFHPFY KDMHAIGSDR KRTKKSLMFA TQSTHKLLAG LSQASQVLVQ DAEDAKLDRD
CFNEAYLMHT STSPQYAIIA SCDVSAAMME SPGGTTLVEE SIAEAMDFRR AMREVDDKFG
ADWWFKVWGP DHLAEEGIGE RSDWVLEPSA PWHDFGKLAK DFNMLDPIKA TVVTPGLDIE
GNFGSMGISA SIVTKYLAEH GVIVEKCGLY SFFIMFTIGI TKGRWNTLVT ELQQFKDHFD
KNAPLWKVLP EFVAKHPRYE RVGLKDICQQ IHEFYKSRDV ARMTTEMYTS DMIPAMMPSE
AWAKMAHKQV DRVPLDRLEG RVTAMLVTPY PPGIPLLIPG ERFNKRIIDY LYFARDFNEK
FPGFETDIHG LVKTSVDGKS EYYVDCVRQE RDITL
//
