ID B2GJ53_KOCRD Unreviewed; 420 AA.
AC B2GJ53;
DT 10-JUN-2008, integrated into UniProtKB/TrEMBL.
DT 10-JUN-2008, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE SubName: Full=Putative ribonuclease D {ECO:0000313|EMBL:BAG29758.1};
DE EC=3.1.13.5 {ECO:0000313|EMBL:BAG29758.1};
GN Name=rnd {ECO:0000313|EMBL:BAG29758.1};
GN OrderedLocusNames=KRH_14110 {ECO:0000313|EMBL:BAG29758.1};
OS Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201).
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae;
OC Kocuria.
OX NCBI_TaxID=378753 {ECO:0000313|EMBL:BAG29758.1, ECO:0000313|Proteomes:UP000008838};
RN [1] {ECO:0000313|EMBL:BAG29758.1, ECO:0000313|Proteomes:UP000008838}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 9341 / DSM 348 / NBRC 103217 / DC2201
RC {ECO:0000313|Proteomes:UP000008838};
RX PubMed=18408034; DOI=10.1128/JB.01853-07;
RA Takarada H., Sekine M., Kosugi H., Matsuo Y., Fujisawa T., Omata S.,
RA Kishi E., Shimizu A., Tsukatani N., Tanikawa S., Fujita N., Harayama S.;
RT "Complete genome sequence of the soil actinomycete Kocuria rhizophila.";
RL J. Bacteriol. 190:4139-4146(2008).
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DR EMBL; AP009152; BAG29758.1; -; Genomic_DNA.
DR RefSeq; WP_012398479.1; NC_010617.1.
DR AlphaFoldDB; B2GJ53; -.
DR STRING; 378753.KRH_14110; -.
DR KEGG; krh:KRH_14110; -.
DR eggNOG; COG0349; Bacteria.
DR HOGENOM; CLU_042387_3_0_11; -.
DR OrthoDB; 144122at2; -.
DR Proteomes; UP000008838; Chromosome.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0033890; F:ribonuclease D activity; IEA:UniProtKB-EC.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd06142; RNaseD_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR041605; Exo_C.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR47649; RIBONUCLEASE D; 1.
DR PANTHER; PTHR47649:SF1; RIBONUCLEASE D; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF18305; DNA_pol_A_exoN; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000313|EMBL:BAG29758.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000008838}.
FT DOMAIN 229..309
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
SQ SEQUENCE 420 AA; 46387 MW; 98424C09D3C09698 CRC64;
MVPGFEHLAI PATVHLNGPA EGLPRVVDTA RGLSRAAEQL AAAHGPVAVD TERASGFRYG
QRAFLVQLRR EGAGTVLIDP EAVGSLAEVD EALRGVEWVL HAATQDMPCL AELDMHPDEL
FDTELGGRLL GLRKVGLASM TEELLGFTLS KEHSAVDWSQ RPLPVDWLNY AALDVEVLVQ
LRWATEERLA RAGKLDWALE EFEHVRTAPP PAPRQDPWRR THGLGNVRGR RKLTAVRNLW
LARESLAEHK DLAPTRLLPD SAIIAAANAM PRTVPQLMST PGFHGRLASR EAPRWLAAVQ
EARLTEEPVP ATIPSTALPP VKGWETKRPE ASARLKVLKP AVAALAEELE LPTENLLTPE
HLRRFCWQPP RSTSDDAVAE RLRELGARSW QVERVAPVIG AEWRALRARR RADKAGEPQD
//
