ID B4FQ10_MAIZE Unreviewed; 477 AA.
AC B4FQ10;
DT 23-SEP-2008, integrated into UniProtKB/TrEMBL.
DT 23-SEP-2008, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:AQK66765.1};
GN Name=100272702 {ECO:0000313|EnsemblPlants:Zm00001eb226830_P001};
GN ORFNames=ZEAMMB73_Zm00001d014666 {ECO:0000313|EMBL:AQK66765.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACF84203.1};
RN [1] {ECO:0000313|EMBL:ACF84203.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACF84203.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [2] {ECO:0000313|EnsemblPlants:Zm00001eb226830_P001, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb226830_P001,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [3] {ECO:0000313|EMBL:AQK66765.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK66765.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb226830_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb226830_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
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DR EMBL; BT039198; ACF84203.1; -; mRNA.
DR EMBL; CM000781; AQK66765.1; -; Genomic_DNA.
DR RefSeq; NP_001140627.1; NM_001147155.1.
DR AlphaFoldDB; B4FQ10; -.
DR SMR; B4FQ10; -.
DR STRING; 4577.B4FQ10; -.
DR PaxDb; 4577-GRMZM2G099434_P01; -.
DR EnsemblPlants; Zm00001eb226830_T001; Zm00001eb226830_P001; Zm00001eb226830.
DR GeneID; 100272702; -.
DR Gramene; Zm00001eb226830_T001; Zm00001eb226830_P001; Zm00001eb226830.
DR KEGG; zma:100272702; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_0_2_1; -.
DR InParanoid; B4FQ10; -.
DR OMA; MDHVIGM; -.
DR OrthoDB; 454078at2759; -.
DR Proteomes; UP000007305; Chromosome 5.
DR ExpressionAtlas; B4FQ10; baseline and differential.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47928:SF122; OS06G0700100 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF01535; PPR; 5.
DR PROSITE; PS51375; PPR; 2.
PE 2: Evidence at transcript level;
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 181..211
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 290..324
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 477 AA; 50020 MW; 37A94CBF357B1BD8 CRC64;
MTHKRHAATG LRTGGTILHA LSAASAAHLH AHALKVGVLF TCLHLCSGLL KTYASSGRIA
AARQLFDEAP RRNVPLWNTL VSAYARCGHP RSALAAASAM ARGGGGGAGA RPNVVTVAIL
MSACAKLRRP APGREVHGYA ARNVAALDLH ALNALVHMYG RCGRLRDART AFAGIGAGAR
NAVSWTAMID ACRENGRPAE ALGVFEEMRR LAGAEVDEAA LLAAVSACAS LDCAAGLGDW
VEACAAESGF LRRGTTSARV ANALIHMHGK AGQVERSCAI FDSMGAARRT VVSWTAMVQA
LATNGHAVAA LVRFAQMLRE GFVPDEVAFL SAIGACACAG LVSEGRRLFE SMVEEHRIAP
QMEHYGSMVE LLCRAGSLAD AFEFVLAMPV APDPVIWRAL AGACRDHGDA GLARRVMDHV
IAMEPHHAGN YLLASNLCAA DEDWGRVVDV RLEMGARKAT ISRTASGAVS SVQVNGE
//
