ID B6D487_9INFA Unreviewed; 384 AA.
AC B6D487;
DT 25-NOV-2008, integrated into UniProtKB/TrEMBL.
DT 25-NOV-2008, sequence version 1.
DT 24-JAN-2024, entry version 50.
DE RecName: Full=RNA-directed RNA polymerase catalytic subunit {ECO:0000256|ARBA:ARBA00020035};
DE EC=2.7.7.48 {ECO:0000256|ARBA:ARBA00012494};
DE Flags: Fragment;
GN Name=PB1 {ECO:0000313|EMBL:ACD88586.1};
OS Influenza A virus (A/chicken/Shanghai/12/2001(H9N2)).
OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC Insthoviricetes; Articulavirales; Orthomyxoviridae; Alphainfluenzavirus;
OC Alphainfluenzavirus influenzae; Influenza A virus.
OX NCBI_TaxID=535214 {ECO:0000313|EMBL:ACD88586.1};
RN [1] {ECO:0000313|EMBL:ACD88586.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=A/chicken/Shanghai/12/2001 {ECO:0000313|EMBL:ACD88586.1};
RX PubMed=19008399; DOI=10.1099/vir.0.2008/005652-0;
RA Zhang P., Tang Y., Liu X., Peng D., Liu W., Liu H., Lu S., Liu X.;
RT "Characterization of H9N2 influenza viruses isolated from vaccinated flocks
RT in an integrated broiler chicken operation in eastern China during a 5 year
RT period (1998-2002).";
RL J. Gen. Virol. 89:3102-3112(2008).
RN [2] {ECO:0000313|EMBL:ACD88586.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=A/chicken/Shanghai/12/2001 {ECO:0000313|EMBL:ACD88586.1};
RA Zhang P.H., Tang Y.H., Liu X.W., Peng D.X., Liu W.B., Liu H.Q., Lu S.,
RA Liu X.F.;
RL Submitted (MAY-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: RNA-dependent RNA polymerase which is responsible for
CC replication and transcription of virus RNA segments. The transcription
CC of viral mRNAs occurs by a unique mechanism called cap-snatching. 5'
CC methylated caps of cellular mRNAs are cleaved after 10-13 nucleotides
CC by PA. In turn, these short capped RNAs are used as primers by PB1 for
CC transcription of viral mRNAs. During virus replication, PB1 initiates
CC RNA synthesis and copy vRNA into complementary RNA (cRNA) which in turn
CC serves as a template for the production of more vRNAs.
CC {ECO:0000256|ARBA:ARBA00002148}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}. Host
CC cytoplasm {ECO:0000256|ARBA:ARBA00004192}. Host nucleus
CC {ECO:0000256|ARBA:ARBA00004147}. Nucleus
CC {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; EU753312; ACD88586.1; -; Viral_cRNA.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0000166; F:nucleotide binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0039523; P:suppression by virus of host mRNA transcription via inhibition of RNA polymerase II activity; IEA:UniProtKB-KW.
DR GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
DR GO; GO:0019083; P:viral transcription; IEA:UniProtKB-KW.
DR InterPro; IPR007099; RNA-dir_pol_NSvirus.
DR InterPro; IPR001407; RNA_pol_PB1_influenza.
DR Pfam; PF00602; Flu_PB1; 1.
DR PROSITE; PS50525; RDRP_SSRNA_NEG_SEG; 1.
PE 4: Predicted;
KW Eukaryotic host gene expression shutoff by virus
KW {ECO:0000256|ARBA:ARBA00023247};
KW Eukaryotic host transcription shutoff by virus
KW {ECO:0000256|ARBA:ARBA00022731};
KW Host cytoplasm {ECO:0000256|ARBA:ARBA00023200};
KW Host gene expression shutoff by virus {ECO:0000256|ARBA:ARBA00022995};
KW Host nucleus {ECO:0000256|ARBA:ARBA00022562};
KW Host-virus interaction {ECO:0000256|ARBA:ARBA00022581};
KW Inhibition of host RNA polymerase II by virus
KW {ECO:0000256|ARBA:ARBA00023103};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Phosphoprotein {ECO:0000256|ARBA:ARBA00022553};
KW RNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022484};
KW Transferase {ECO:0000256|ARBA:ARBA00022484};
KW Viral RNA replication {ECO:0000256|ARBA:ARBA00022953};
KW Viral transcription {ECO:0000256|ARBA:ARBA00023314}.
FT DOMAIN 49..246
FT /note="RdRp catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50525"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACD88586.1"
FT NON_TER 384
FT /evidence="ECO:0000313|EMBL:ACD88586.1"
SQ SEQUENCE 384 AA; 43990 MW; 4161BF531DA75DC4 CRC64;
RRAIATPGMQ IRGFVYFVET LARSICEKLE QSGLPVGGNE KKAKLANVVR KMMTNSQDTE
LSFTITGDNT KWNENQNPRM FLAMITYITR NQPEWFRNVL SIAPIMFSNK MARLGKGYMF
ESKNMKLRTQ IPAEMLANID LKYFNKSTRE KIEKIRPLLI DGTASLSPGM MMGMFNMLST
VLGVSILNLG QKKYTKTTYW WDGLQSSDDF ALIVNAPNHE GIQAGVDRFY RTCKLVGINM
SKKKSYINRT GTFEFTSFFY RYGFVANFSM ELPSFGVSGI NESADMSIGV TVIKNNMINN
DLGPATAQMA LQLFIKDYRY TYRCHRGDTQ IQTRRAFELK KLWEQTRSKT GLLVSDGGPN
LYNIRNLHIP EVCLKWELMD EDYQ
//
