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Database: UniProt
Entry: B6JWS0_SCHJY
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Original site: B6JWS0_SCHJY 
ID   B6JWS0_SCHJY            Unreviewed;      1129 AA.
AC   B6JWS0;
DT   16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT   16-DEC-2008, sequence version 1.
DT   24-JAN-2024, entry version 56.
DE   RecName: Full=Mitochondrial group I intron splicing factor CCM1 {ECO:0000256|ARBA:ARBA00019650};
GN   ORFNames=SJAG_00847 {ECO:0000313|EMBL:EEB05821.1};
OS   Schizosaccharomyces japonicus (strain yFS275 / FY16936) (Fission yeast).
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
OC   Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae;
OC   Schizosaccharomyces.
OX   NCBI_TaxID=402676 {ECO:0000313|EMBL:EEB05821.1, ECO:0000313|Proteomes:UP000001744};
RN   [1] {ECO:0000313|EMBL:EEB05821.1, ECO:0000313|Proteomes:UP000001744}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=yFS275 / FY16936 {ECO:0000313|Proteomes:UP000001744};
RX   PubMed=21511999; DOI=10.1126/science.1203357;
RA   Rhind N., Chen Z., Yassour M., Thompson D.A., Haas B.J., Habib N.,
RA   Wapinski I., Roy S., Lin M.F., Heiman D.I., Young S.K., Furuya K., Guo Y.,
RA   Pidoux A., Chen H.M., Robbertse B., Goldberg J.M., Aoki K., Bayne E.H.,
RA   Berlin A.M., Desjardins C.A., Dobbs E., Dukaj L., Fan L., FitzGerald M.G.,
RA   French C., Gujja S., Hansen K., Keifenheim D., Levin J.Z., Mosher R.A.,
RA   Mueller C.A., Pfiffner J., Priest M., Russ C., Smialowska A., Swoboda P.,
RA   Sykes S.M., Vaughn M., Vengrova S., Yoder R., Zeng Q., Allshire R.,
RA   Baulcombe D., Birren B.W., Brown W., Ekwall K., Kellis M., Leatherwood J.,
RA   Levin H., Margalit H., Martienssen R., Nieduszynski C.A., Spatafora J.W.,
RA   Friedman N., Dalgaard J.Z., Baumann P., Niki H., Regev A., Nusbaum C.;
RT   "Comparative functional genomics of the fission yeasts.";
RL   Science 332:930-936(2011).
CC   -!- FUNCTION: RNA-binding protein involved in the specific removal of group
CC       I introns in mitochondrial encoded transcripts. Maintains the stability
CC       of the small subunit mitochondrial 15S rRNA and thus the expression of
CC       the mitochondrial genome. {ECO:0000256|ARBA:ARBA00024866}.
CC   -!- SIMILARITY: Belongs to the CCM1 family.
CC       {ECO:0000256|ARBA:ARBA00006192}.
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DR   EMBL; KE651166; EEB05821.1; -; Genomic_DNA.
DR   RefSeq; XP_002172114.1; XM_002172078.1.
DR   AlphaFoldDB; B6JWS0; -.
DR   STRING; 402676.B6JWS0; -.
DR   EnsemblFungi; EEB05821; EEB05821; SJAG_00847.
DR   GeneID; 7048922; -.
DR   JaponicusDB; SJAG_00847; -.
DR   VEuPathDB; FungiDB:SJAG_00847; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002863_0_0_1; -.
DR   OMA; GHIDEIS; -.
DR   OrthoDB; 2056457at2759; -.
DR   Proteomes; UP000001744; Unassembled WGS sequence.
DR   GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR   GO; GO:0140053; P:mitochondrial gene expression; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR47934:SF6; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1-RELATED; 1.
DR   PANTHER; PTHR47934; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL; 1.
DR   Pfam; PF01535; PPR; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   Pfam; PF13812; PPR_3; 1.
DR   SUPFAM; SSF81901; HCP-like; 1.
DR   PROSITE; PS51375; PPR; 2.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000001744}.
FT   REPEAT          824..858
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          859..889
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   1129 AA;  128308 MW;  3A05285000681680 CRC64;
     MQVAMAITIK NVSDVDTLGD ADFKKHVKLK PAQLPMLTIV PSPNALPSVP LERQMVGFQP
     SPLTSPSQDL HSSIHSSTTS STLYSCSSAT SSNNASSEEY LLGSEVVPAA ASKQVEVLQL
     FDFVTNSGFP VSPDFYDRCL IGIADTLELS EFLNAFRVIG SIFEKLQVLE TAPSSEAFEK
     TVLFLCRQTR WIAQHKQVLE SRCYGGSVCV EQLAKIRSFY DANKSMNLLA SFLKRFWNSY
     ERNLSSEFYH EVLSAISQYG SSDDLLMVYD HMQRCSIPET AQTFISLIRG FGRAKDLTVA
     IECFNEYKRS FNTLPAHSSY DVYAALVTAC FDCDDSDRAV KFFARLEQED EGDVPPSLIY
     IFGQRFAELG EFDKAMSWLE RLQQMKSTSS LVPKLGSTIL NNAAQKRVST VVDKLLEMIP
     LKAFRKEYVA LMNYFLYLAA TKQFTAFIND SNDYLRSLSM WTNCTFKEAY LGLIQNGRLN
     DALDVLEHHV STPVVDSHFD VDNPTLQKAI LEDFWSCLSL NSEKMDSSLR ILLMLQNQPH
     YFVLNYAAEL AVCFLASQDP SAPCDSELWS YLFEYLCFTI CKVPQNSEHL ESLRNTFSFV
     VKHNIPLTIR DHALVHKVFN TYSTQLKGIK SFDELLAPYR MPSVDIAMMR NAFPSRSALR
     SHIPKIEIES SGEIIPVLEG IVDRATAVRF YNRVAKAHYN GKLFLPTVYI LLSQTLIKFN
     LFGAVEKMRM YSLTLQKEMM PHFKRHAELF QAAILDTQLA SFAMQKKNKQ AFRLKNTIAR
     LGYYPSASSY AHIISNIVDS KEHDDAAEAL RFFKEAKEHN VRPSVFLYNT VLSKLGRARR
     TSECITLFEE MKSLGLVPSS VTYGTVINAA CRIGDETLAE ELFEEMEQQP NYQARVAPYN
     TIIQFEIQVL HNRDKALKYY ERLRKHKIKP STHTYKLLLD AYGTLEPVDF VAVQGVMRSM
     EHNKCALQAM HYSAYMRICG CIMKKMNEAR KTYKAALSMH QQGNLTLDGY LFQTYIDVLV
     ANGHIDEISE VIKDMEKHEI RLNAYIVNSL ITGFFKAKQI ETARYFYNCL DGEGIYGKEP
     STYETMAKAY LGCGDRKNAL RVLEELSKRK FPEAVVKRVA DSIMFRNHS
//
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