ID B6JWS0_SCHJY Unreviewed; 1129 AA.
AC B6JWS0;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 24-JAN-2024, entry version 56.
DE RecName: Full=Mitochondrial group I intron splicing factor CCM1 {ECO:0000256|ARBA:ARBA00019650};
GN ORFNames=SJAG_00847 {ECO:0000313|EMBL:EEB05821.1};
OS Schizosaccharomyces japonicus (strain yFS275 / FY16936) (Fission yeast).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
OC Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae;
OC Schizosaccharomyces.
OX NCBI_TaxID=402676 {ECO:0000313|EMBL:EEB05821.1, ECO:0000313|Proteomes:UP000001744};
RN [1] {ECO:0000313|EMBL:EEB05821.1, ECO:0000313|Proteomes:UP000001744}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=yFS275 / FY16936 {ECO:0000313|Proteomes:UP000001744};
RX PubMed=21511999; DOI=10.1126/science.1203357;
RA Rhind N., Chen Z., Yassour M., Thompson D.A., Haas B.J., Habib N.,
RA Wapinski I., Roy S., Lin M.F., Heiman D.I., Young S.K., Furuya K., Guo Y.,
RA Pidoux A., Chen H.M., Robbertse B., Goldberg J.M., Aoki K., Bayne E.H.,
RA Berlin A.M., Desjardins C.A., Dobbs E., Dukaj L., Fan L., FitzGerald M.G.,
RA French C., Gujja S., Hansen K., Keifenheim D., Levin J.Z., Mosher R.A.,
RA Mueller C.A., Pfiffner J., Priest M., Russ C., Smialowska A., Swoboda P.,
RA Sykes S.M., Vaughn M., Vengrova S., Yoder R., Zeng Q., Allshire R.,
RA Baulcombe D., Birren B.W., Brown W., Ekwall K., Kellis M., Leatherwood J.,
RA Levin H., Margalit H., Martienssen R., Nieduszynski C.A., Spatafora J.W.,
RA Friedman N., Dalgaard J.Z., Baumann P., Niki H., Regev A., Nusbaum C.;
RT "Comparative functional genomics of the fission yeasts.";
RL Science 332:930-936(2011).
CC -!- FUNCTION: RNA-binding protein involved in the specific removal of group
CC I introns in mitochondrial encoded transcripts. Maintains the stability
CC of the small subunit mitochondrial 15S rRNA and thus the expression of
CC the mitochondrial genome. {ECO:0000256|ARBA:ARBA00024866}.
CC -!- SIMILARITY: Belongs to the CCM1 family.
CC {ECO:0000256|ARBA:ARBA00006192}.
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DR EMBL; KE651166; EEB05821.1; -; Genomic_DNA.
DR RefSeq; XP_002172114.1; XM_002172078.1.
DR AlphaFoldDB; B6JWS0; -.
DR STRING; 402676.B6JWS0; -.
DR EnsemblFungi; EEB05821; EEB05821; SJAG_00847.
DR GeneID; 7048922; -.
DR JaponicusDB; SJAG_00847; -.
DR VEuPathDB; FungiDB:SJAG_00847; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002863_0_0_1; -.
DR OMA; GHIDEIS; -.
DR OrthoDB; 2056457at2759; -.
DR Proteomes; UP000001744; Unassembled WGS sequence.
DR GO; GO:0005739; C:mitochondrion; IBA:GO_Central.
DR GO; GO:0140053; P:mitochondrial gene expression; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR47934:SF6; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1-RELATED; 1.
DR PANTHER; PTHR47934; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000001744}.
FT REPEAT 824..858
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 859..889
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 1129 AA; 128308 MW; 3A05285000681680 CRC64;
MQVAMAITIK NVSDVDTLGD ADFKKHVKLK PAQLPMLTIV PSPNALPSVP LERQMVGFQP
SPLTSPSQDL HSSIHSSTTS STLYSCSSAT SSNNASSEEY LLGSEVVPAA ASKQVEVLQL
FDFVTNSGFP VSPDFYDRCL IGIADTLELS EFLNAFRVIG SIFEKLQVLE TAPSSEAFEK
TVLFLCRQTR WIAQHKQVLE SRCYGGSVCV EQLAKIRSFY DANKSMNLLA SFLKRFWNSY
ERNLSSEFYH EVLSAISQYG SSDDLLMVYD HMQRCSIPET AQTFISLIRG FGRAKDLTVA
IECFNEYKRS FNTLPAHSSY DVYAALVTAC FDCDDSDRAV KFFARLEQED EGDVPPSLIY
IFGQRFAELG EFDKAMSWLE RLQQMKSTSS LVPKLGSTIL NNAAQKRVST VVDKLLEMIP
LKAFRKEYVA LMNYFLYLAA TKQFTAFIND SNDYLRSLSM WTNCTFKEAY LGLIQNGRLN
DALDVLEHHV STPVVDSHFD VDNPTLQKAI LEDFWSCLSL NSEKMDSSLR ILLMLQNQPH
YFVLNYAAEL AVCFLASQDP SAPCDSELWS YLFEYLCFTI CKVPQNSEHL ESLRNTFSFV
VKHNIPLTIR DHALVHKVFN TYSTQLKGIK SFDELLAPYR MPSVDIAMMR NAFPSRSALR
SHIPKIEIES SGEIIPVLEG IVDRATAVRF YNRVAKAHYN GKLFLPTVYI LLSQTLIKFN
LFGAVEKMRM YSLTLQKEMM PHFKRHAELF QAAILDTQLA SFAMQKKNKQ AFRLKNTIAR
LGYYPSASSY AHIISNIVDS KEHDDAAEAL RFFKEAKEHN VRPSVFLYNT VLSKLGRARR
TSECITLFEE MKSLGLVPSS VTYGTVINAA CRIGDETLAE ELFEEMEQQP NYQARVAPYN
TIIQFEIQVL HNRDKALKYY ERLRKHKIKP STHTYKLLLD AYGTLEPVDF VAVQGVMRSM
EHNKCALQAM HYSAYMRICG CIMKKMNEAR KTYKAALSMH QQGNLTLDGY LFQTYIDVLV
ANGHIDEISE VIKDMEKHEI RLNAYIVNSL ITGFFKAKQI ETARYFYNCL DGEGIYGKEP
STYETMAKAY LGCGDRKNAL RVLEELSKRK FPEAVVKRVA DSIMFRNHS
//