ID B6KGB1_TOXGV Unreviewed; 484 AA.
AC B6KGB1; A0A0F7V062; B9QQT3; S8GQP4;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 08-NOV-2023, entry version 71.
DE SubName: Full=DNA-directed RNA polymerase II RPB3 {ECO:0000313|EMBL:ESS31282.1};
DE EC=2.7.7.6 {ECO:0000313|EMBL:ESS31282.1};
DE SubName: Full=DNA-directed RNA polymerase II, putative {ECO:0000313|EMBL:CEL73495.1};
GN ORFNames=BN1205_036050 {ECO:0000313|EMBL:CEL73495.1}, TGVEG_238190
GN {ECO:0000313|EMBL:ESS31282.1};
OS Toxoplasma gondii (strain ATCC 50861 / VEG).
OC Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia;
OC Eucoccidiorida; Eimeriorina; Sarcocystidae; Toxoplasma.
OX NCBI_TaxID=432359 {ECO:0000313|EMBL:ESS31282.1, ECO:0000313|Proteomes:UP000002226};
RN [1] {ECO:0000313|EMBL:ESS31282.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=VEG {ECO:0000313|EMBL:ESS31282.1};
RA Paulsen I.;
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000002226}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 50861 / VEG {ECO:0000313|Proteomes:UP000002226};
RA Lorenzi H., Inman J., Amedeo P., Brunk B., Roos D., Caler E.;
RT "Annotation of Toxoplasma gondii VEG.";
RL Submitted (MAR-2008) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:ESS31282.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=VEG {ECO:0000313|EMBL:ESS31282.1};
RA Sibley D., Venepally P., Karamycheva S., Hadjithomas M., Khan A., Brunk B.,
RA Roos D., Caler E., Lorenzi H.;
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:CEL73495.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=VEG {ECO:0000313|EMBL:CEL73495.1};
RX PubMed=25875305; DOI=10.1371/journal.pone.0124473;
RA Ramaprasad A., Mourier T., Naeem R., Malas T.B., Moussa E., Panigrahi A.,
RA Vermont S.J., Otto T.D., Wastling J., Pain A.;
RT "Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV
RT Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel
RT Transcript Features.";
RL PLoS ONE 10:e0124473-e0124473(2015).
CC -!- SIMILARITY: Belongs to the archaeal Rpo3/eukaryotic RPB3 RNA polymerase
CC subunit family. {ECO:0000256|ARBA:ARBA00025804}.
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DR EMBL; LN714495; CEL73495.1; -; Genomic_DNA.
DR EMBL; AAYL02000194; ESS31282.1; -; Genomic_DNA.
DR AlphaFoldDB; B6KGB1; -.
DR STRING; 432359.B6KGB1; -.
DR PaxDb; 5811-TGME49_038190; -.
DR EnsemblProtists; ESS31282; ESS31282; TGVEG_238190.
DR VEuPathDB; ToxoDB:TGVEG_238190; -.
DR eggNOG; KOG1522; Eukaryota.
DR OMA; ENTSPFH; -.
DR Proteomes; UP000002226; Partially assembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd07031; RNAP_II_RPB3; 1.
DR Gene3D; 2.170.120.12; DNA-directed RNA polymerase, insert domain; 1.
DR Gene3D; 3.30.1360.10; RNA polymerase, RBP11-like subunit; 1.
DR HAMAP; MF_00320; RNApol_arch_Rpo3; 1.
DR InterPro; IPR001514; DNA-dir_RNA_pol_30-40kDasu_CS.
DR InterPro; IPR011262; DNA-dir_RNA_pol_insert.
DR InterPro; IPR011263; DNA-dir_RNA_pol_RpoA/D/Rpb3.
DR InterPro; IPR036603; RBP11-like.
DR InterPro; IPR022842; RNAP_Rpo3/Rpb3/RPAC1.
DR InterPro; IPR036643; RNApol_insert_sf.
DR PANTHER; PTHR11800; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR11800:SF2; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3; 1.
DR Pfam; PF01000; RNA_pol_A_bac; 1.
DR Pfam; PF01193; RNA_pol_L; 1.
DR SMART; SM00662; RPOLD; 1.
DR SUPFAM; SSF56553; Insert subdomain of RNA polymerase alpha subunit; 1.
DR SUPFAM; SSF55257; RBP11-like subunits of RNA polymerase; 1.
DR PROSITE; PS00446; RNA_POL_D_30KD; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:ESS31282.1};
KW Nucleotidyltransferase {ECO:0000313|EMBL:ESS31282.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000002226};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000313|EMBL:ESS31282.1}.
FT DOMAIN 162..452
FT /note="DNA-directed RNA polymerase RpoA/D/Rpb3-type"
FT /evidence="ECO:0000259|SMART:SM00662"
FT REGION 1..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..33
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 81..95
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 484 AA; 51732 MW; 62ED3776DD5138A3 CRC64;
MDSFFSQPVP GHGSTQREFD SQASSSDPSF AHSSLGSGVA AHAAVSGSSD RGRGAQLADP
THLGRATEAQ DGRGAAREET AGLSGQSSTG KSDYFSSLLS KSESQKASRF DRDTFAPTSG
AQAPAAGSLF PGAAFSGFAG LAAGGSMAYE PSIVVKEVSQ NKVKFLLENC DVSIANGLRR
VMISEVPSLA IDLVTVYENT SVLHDEYISH RLGLLPIDST RVAEFVNRDD CDCADHCSRC
SVQYALDVVC ERDSLLVTHR DIVADNARGA SLASAGFLDL GCPMPVPLLR EMQEKEMDGI
PIVKLRKNQS VNMRMTATKG IGKVHAKWSP VATASYKFEP EIAFEEDLLA RAPAEVKRQI
AASCPREVFS FIDDTATGGT GVLRVENKMN CIFCDQCKVK AQELGFRRLV RVEPNERKFH
FTVESTGVMP AEQIVEMAFD ILLNKVTELE GLVSQASARA TGASTFASAA EARPSGGSVR
LDLD
//