ID B7FRY5_PHATC Unreviewed; 651 AA.
AC B7FRY5;
DT 10-FEB-2009, integrated into UniProtKB/TrEMBL.
DT 10-FEB-2009, sequence version 1.
DT 27-MAR-2024, entry version 75.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEC50390.1};
GN ORFNames=PHATRDRAFT_43349 {ECO:0000313|EMBL:EEC50390.1};
OS Phaeodactylum tricornutum (strain CCAP 1055/1).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae;
OC Phaeodactylum.
OX NCBI_TaxID=556484 {ECO:0000313|EMBL:EEC50390.1, ECO:0000313|Proteomes:UP000000759};
RN [1] {ECO:0000313|EMBL:EEC50390.1, ECO:0000313|Proteomes:UP000000759}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCAP 1055/1 {ECO:0000313|EMBL:EEC50390.1,
RC ECO:0000313|Proteomes:UP000000759};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
RN [2] {ECO:0000313|Proteomes:UP000000759}
RP GENOME REANNOTATION.
RC STRAIN=CCAP 1055/1 {ECO:0000313|Proteomes:UP000000759};
RG Diatom Consortium;
RA Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C.,
RA Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S.,
RA Rokhsar D., Bowler C.;
RL Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the WD repeat SMU1 family.
CC {ECO:0000256|ARBA:ARBA00025801}.
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DR EMBL; CM000606; EEC50390.1; -; Genomic_DNA.
DR RefSeq; XP_002177576.1; XM_002177540.1.
DR AlphaFoldDB; B7FRY5; -.
DR STRING; 556484.B7FRY5; -.
DR PaxDb; 2850-Phatr43349; -.
DR EnsemblProtists; Phatr3_J43349.t1; Phatr3_J43349.p1; Phatr3_J43349.
DR GeneID; 7197100; -.
DR KEGG; pti:PHATRDRAFT_43349; -.
DR eggNOG; KOG0275; Eukaryota.
DR HOGENOM; CLU_421215_0_0_1; -.
DR InParanoid; B7FRY5; -.
DR OMA; MMKQQEP; -.
DR OrthoDB; 3893433at2759; -.
DR Proteomes; UP000000759; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR045184; SMU1.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR22848; WD40 REPEAT PROTEIN; 1.
DR PANTHER; PTHR22848:SF0; WD40 REPEAT-CONTAINING PROTEIN SMU1; 1.
DR Pfam; PF17814; LisH_TPL; 1.
DR Pfam; PF00400; WD40; 3.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 3.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00023187};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Reference proteome {ECO:0000313|Proteomes:UP000000759};
KW WD repeat {ECO:0000256|PROSITE-ProRule:PRU00221}.
FT REPEAT 323..336
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 357..398
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 399..440
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
SQ SEQUENCE 651 AA; 70215 MW; 48F7B8ED17CB7EE3 CRC64;
MPTNDNDTNS KNGQSQLTIP SADVVRLVQA FLTESGLHES CRVLQHESGV GQAGMTETAS
YHSRTSTDYQ HSPWYAWATS GQWGTVLSRL RWIDASRARL DEGLRAAVHQ MAVLELADQG
EYELAYAAYR LVQPLLAGSH ATDQDLGPDA AAPESIPVTR ASLVEQLLAQ LAALRAKSNA
SPKALPDDYY GYRQTTPQAR REFLGQALTD AVPIQPKDRL VSLLQQALKW QIYTGELPKI
QQHWPANDSK TKGKKRKRVF DLVLGTSHVD PVVVGETNDS SLLPLQEPTI EQPYATVKLG
KHVTATAAVF LPPTSDGSGS CSLVTGSSDG LIEIWDPVSK YSALRTNDLP YQAKDELLGM
DASISALAVS NDGTLLAGAD LQGTVQVWRV DTGKCLRSML AHSTSISALA FSPDASHVLT
ASRDGTAREF GLRTSRMLKE FQGHASYVNI CGYVVSVTHL LVVTGSADGT VRIFDGKTSE
TLRILKPKSL GLRVSEVNTS LLADEQSDDS AASPSIQTVL FLHTPAHTMV VVPRGRRAFL
VAISSGIVLR TFEGEGASDG TNVFVAACAS VSNRVLYIVQ EDGSCCVFDT TTGERIRTVA
DFASQSAYAS KDPKSTAILE ISALVHHPIK PLVGAYCSDK IQKKGQLVLW K
//
