ID B7FRZ8_PHATC Unreviewed; 689 AA.
AC B7FRZ8;
DT 10-FEB-2009, integrated into UniProtKB/TrEMBL.
DT 10-FEB-2009, sequence version 1.
DT 27-MAR-2024, entry version 55.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=PHATRDRAFT_43359 {ECO:0000313|EMBL:EEC50705.1};
OS Phaeodactylum tricornutum (strain CCAP 1055/1).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae;
OC Phaeodactylum.
OX NCBI_TaxID=556484 {ECO:0000313|EMBL:EEC50705.1, ECO:0000313|Proteomes:UP000000759};
RN [1] {ECO:0000313|EMBL:EEC50705.1, ECO:0000313|Proteomes:UP000000759}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCAP 1055/1 {ECO:0000313|EMBL:EEC50705.1,
RC ECO:0000313|Proteomes:UP000000759};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
RN [2] {ECO:0000313|Proteomes:UP000000759}
RP GENOME REANNOTATION.
RC STRAIN=CCAP 1055/1 {ECO:0000313|Proteomes:UP000000759};
RG Diatom Consortium;
RA Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C.,
RA Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S.,
RA Rokhsar D., Bowler C.;
RL Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the HTATSF1 family.
CC {ECO:0000256|ARBA:ARBA00007747}.
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DR EMBL; CM000606; EEC50705.1; -; Genomic_DNA.
DR RefSeq; XP_002177891.1; XM_002177855.1.
DR AlphaFoldDB; B7FRZ8; -.
DR STRING; 556484.B7FRZ8; -.
DR PaxDb; 2850-Phatr43359; -.
DR GeneID; 7197108; -.
DR KEGG; pti:PHATRDRAFT_43359; -.
DR eggNOG; KOG1548; Eukaryota.
DR HOGENOM; CLU_026945_1_1_1; -.
DR InParanoid; B7FRZ8; -.
DR OrthoDB; 10213at2759; -.
DR Proteomes; UP000000759; Chromosome 2.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd12281; RRM1_TatSF1_like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR034393; TatSF1-like.
DR InterPro; IPR034392; TatSF1-like_RRM1.
DR PANTHER; PTHR15608:SF0; HIV TAT-SPECIFIC FACTOR 1; 1.
DR PANTHER; PTHR15608; SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 1.
PE 3: Inferred from homology;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Reference proteome {ECO:0000313|Proteomes:UP000000759};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|PROSITE-
KW ProRule:PRU00176}.
FT DOMAIN 412..507
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 339..403
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..19
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 689 AA; 76797 MW; 496BD62C570B2DF6 CRC64;
MGQGLPRTGM NTGGNVQSAP SKRWVDWGTP ATTMVVTLPF RFASNRLFFP VVTMFDRSSR
CNYWFTNFWS SLAFRSRQPG TVAPLGCTTD CAKAIGTLDG IDRILRSFGG PPITDYIRIL
GSSLTMTDGS REIAPSSAEA MLDTLYLYQN PTTGEVSTTA RWTSRQLCRL LCPSTSTAIL
PQHLTLDTQI LRLNTDGSYA NTGWQAAKTA PIVRQAVEIW YYEQDGAVQG PVSSRQLATL
YYDCPVVLYP TSRVYSESTP SWTPIQSLPL LQLALEALRP NGVNSLGTTQ DTPTYDPGFL
AFPSNTKVSE KEYDEIPKEA KDELEVFLQS TAIIGGSRIT EDEEDETYES DNGTRYVKDP
RTGNWIHEAL APKQPHKKES NEAKSSSHLQ TASAHPPKKR KKAKFAAKNS KCWIYVTGLP
PDCTEEEIAS IFCKAGIIDL DPETQQPKIK IYLDQASGLP KGDASICYAR AESVDLAVTL
LDEAPFRPSV RSDACVQYVL HVERAKFEQR GRVFDDGRQR VSLAKRKVAK LAAVQATDWD
EGEFNGRLTG GRKGLRIVVL KHLFDPSVLS ANEEDGMLAV LERDLRKECE QWGVVEKITI
FSKNLQGVVV VKFAQPGSAS DAIKHLDGLE WPTGSSKRRV HATFWDGVTD FTVRNEIKEQ
EEAEKRQKEF GNWLEKQELP EELRLRITD
//
