ID B8AT49_ORYSI Unreviewed; 1598 AA.
AC B8AT49;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 78.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
GN ORFNames=OsI_17044 {ECO:0000313|EMBL:EEC77828.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC77828.1, ECO:0000313|Proteomes:UP000007015};
RN [1] {ECO:0000313|EMBL:EEC77828.1, ECO:0000313|Proteomes:UP000007015}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015};
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
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DR EMBL; CM000129; EEC77828.1; -; Genomic_DNA.
DR STRING; 39946.B8AT49; -.
DR EnsemblPlants; BGIOSGA016952-TA; BGIOSGA016952-PA; BGIOSGA016952.
DR Gramene; BGIOSGA016952-TA; BGIOSGA016952-PA; BGIOSGA016952.
DR HOGENOM; CLU_002449_0_1_1; -.
DR OMA; NCEITDG; -.
DR Proteomes; UP000007015; Chromosome 4.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0009536; C:plastid; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd10506; RNAP_IV_RPD1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 3.10.450.40; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR040403; NRPD1_N.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF36; DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1; 1.
DR Pfam; PF11523; DUF3223; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000007015};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00723}.
FT DOMAIN 1403..1431
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 1403..1431
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 1374..1394
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1598 AA; 177958 MW; BF190E8003A16673 CRC64;
MEEPSLEVNN PVAELNAIKF SLMTSSDMEK LSSATIIEMC DVTNAKLGLP NGAPQCATCG
SRSIRDCDGK KKLTGKLLGH FGVIKLAATV HNSYFIEEVV QLLNQICPGC LTLKQNGDTK
KADGTTIQGT CKYCSKDGSK LYPSIIFKML TSPRVTLSRS KLHRNTSVMD KMSIIAEVAG
GVAHKSKNKA PHETLPQDFW DFIPDDNQPP IFNVTKKILS PYQVFHMLKK LDPELINQDD
RTKAYKRMVD LYSKKSDDES SASTDTYGIK WLKDIILSKR SDNAFRSIMV GDPKINLNEI
GIPMGLALNL VVSEQVSSYN FETINLKCNL HLLTKEVLLV RRNGNLIFVR KANQLEIGDI
AYRLLQDGDL VLVNRPPSVH QHSLIALSAK LLSTQSAVSI NPLCCDPFKG DFDGDCLHGY
IPQCLQSRIE LEELVSLSGQ LLNQQDGRSL VSLTHDSLAA AHQLTNADVF LEKAEFQQLQ
MLSSSISLTP MPSVFKSTNS QGPLWTGKQL FGMLLPYGMN ISFDQKLHIK DSEVLTCSSG
SFWLQNNTSS LFSVMFKEYG CKALEFLSST QDVLCEFLTM WGLSVSLSDL YLFSDHYSRR
KLSEEVHLAL DEAEEAFQIK QILLNSVSIP NLKYYDGGDD RSNTDEQSGF TQVSLPIIRS
SMTSFKSVFN DLLKMVQQYV SKDNSMMTMI NSGSKGSVLK FVQQTACVGL QLPASKFPFR
IPSQLSCVSW NRHKSLNCEI TDGTSECVGG QDMYAVIRNS FLDGLNPLEC LLHAISGRAN
FFSENADVPG TLTRKLMYHL RDTYVAYDGT VRSSYGQQIV RFSYDTADGM YSDHDLEGEP
GAPVGSWAAC SISEAAYGAL DHPVNSLEDS PLMNLQEVLK CHKGTNSLDH TGLLFLSKHL
RKYRYGFEYA SLEVKDHLER VDFSDMVDTV IILYGGSDMQ KTKGNPWITH FHLSQETMKI
KRLGLEFIVR EIIDQYNTLR KQLNNAIPSV SISNSETLHL KMENKSGKLG KNLGTGNECV
KNQTCCVSMV VQVEINSMSQ LDVIKERVIP SILATLLKGF LEFKNVKVQC QEDNELVLKV
GMSEHCKSGK FWATLQNACI PIMELIDWER SRPERVYDNF CSYGIDSAWK FFVESLRSTT
DAIGRNIHRQ HLLVVADCLS RPAHSFINAA KRDSVDNLSG TLDAIAWGKE PCTGSSGPFK
ILYSGKSHET KQNEHIYDFL HNPEVQALEK NVMDTYRKRT EKTSKRRSAL NSEGNATING
GAISFNQKFL NSKVGIWENI IDMRTSLQNM LREYTLNEVV TEQDKSCLIE ALKFHPRGYD
KIGVGIREIK IGVNPGHPSS RCFIVLRNDD TTADFSYNNR FPCRYLHSEL PEAPPERLRP
SHRPSAAACG GGGGGGGNCV VSSTREKPCK FFLSGDCRYG DECRCYLHAG SINDGFSLLT
PLRGHQKEPL LFVGIPDAVK IWDTGAEMSL SEPTGEYMHW RLAMGCSSLQ CNYTSLGCYG
KLETGSLAVT YTHNEDHGAL ALAGMQDAQL NPILLWSTNY NIVHLYELPS FAERGKISFE
AEVGAVKNGP GGLIFTSDEI GKLKLWKWTA ERTSGVSN
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