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Database: UniProt
Entry: B8BXL1_THAPS
LinkDB: B8BXL1_THAPS
Original site: B8BXL1_THAPS 
ID   B8BXL1_THAPS            Unreviewed;      1148 AA.
AC   B8BXL1;
DT   03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   03-MAR-2009, sequence version 1.
DT   24-JAN-2024, entry version 67.
DE   SubName: Full=REV1 protein {ECO:0000313|EMBL:EED93723.1};
GN   ORFNames=THAPSDRAFT_268460 {ECO:0000313|EMBL:EED93723.1};
OS   Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC   Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC   Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC   Thalassiosiraceae; Thalassiosira.
OX   NCBI_TaxID=35128 {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449};
RN   [1] {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCMP1335 {ECO:0000313|EMBL:EED93723.1};
RX   PubMed=15459382; DOI=10.1126/science.1101156;
RA   Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA   Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA   Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA   Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA   Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA   Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA   Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA   Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA   Wilkerson F.P., Rokhsar D.S.;
RT   "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT   metabolism.";
RL   Science 306:79-86(2004).
RN   [2] {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CCMP1335 {ECO:0000313|EMBL:EED93723.1};
RX   PubMed=18923393; DOI=10.1038/nature07410;
RA   Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA   Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA   Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA   Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA   Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA   Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA   Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA   La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA   Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA   Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA   Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA   Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA   Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA   Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA   Grigoriev I.V.;
RT   "The Phaeodactylum genome reveals the evolutionary history of diatom
RT   genomes.";
RL   Nature 456:239-244(2008).
CC   -!- SIMILARITY: Belongs to the DNA polymerase type-Y family.
CC       {ECO:0000256|ARBA:ARBA00010945}.
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DR   EMBL; CM000640; EED93723.1; -; Genomic_DNA.
DR   RefSeq; XP_002288287.1; XM_002288251.1.
DR   AlphaFoldDB; B8BXL1; -.
DR   STRING; 35128.B8BXL1; -.
DR   PaxDb; 35128-Thaps268460; -.
DR   EnsemblProtists; EED93723; EED93723; THAPSDRAFT_268460.
DR   GeneID; 7444747; -.
DR   KEGG; tps:THAPSDRAFT_268460; -.
DR   eggNOG; KOG2093; Eukaryota.
DR   HOGENOM; CLU_276892_0_0_1; -.
DR   InParanoid; B8BXL1; -.
DR   OMA; AECNYGV; -.
DR   Proteomes; UP000001449; Chromosome 3.
DR   GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR   GO; GO:0017125; F:deoxycytidyl transferase activity; IBA:GO_Central.
DR   GO; GO:0003887; F:DNA-directed DNA polymerase activity; IBA:GO_Central.
DR   GO; GO:0070987; P:error-free translesion synthesis; IBA:GO_Central.
DR   GO; GO:0042276; P:error-prone translesion synthesis; IBA:GO_Central.
DR   CDD; cd17719; BRCT_Rev1; 1.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 3.40.1170.60; -; 1.
DR   Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR   Gene3D; 3.40.50.10190; BRCT domain; 1.
DR   Gene3D; 3.30.1490.100; DNA polymerase, Y-family, little finger domain; 1.
DR   InterPro; IPR001357; BRCT_dom.
DR   InterPro; IPR036420; BRCT_dom_sf.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR036775; DNA_pol_Y-fam_lit_finger_sf.
DR   InterPro; IPR017961; DNA_pol_Y-fam_little_finger.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR001126; UmuC.
DR   PANTHER; PTHR45990; DNA REPAIR PROTEIN REV1; 1.
DR   PANTHER; PTHR45990:SF1; DNA REPAIR PROTEIN REV1; 1.
DR   Pfam; PF16589; BRCT_2; 1.
DR   Pfam; PF00817; IMS; 1.
DR   Pfam; PF11799; IMS_C; 1.
DR   SMART; SM00292; BRCT; 1.
DR   SUPFAM; SSF52113; BRCT domain; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF100879; Lesion bypass DNA polymerase (Y-family), little finger domain; 1.
DR   PROSITE; PS50172; BRCT; 1.
DR   PROSITE; PS50173; UMUC; 1.
PE   3: Inferred from homology;
KW   DNA synthesis {ECO:0000256|ARBA:ARBA00022634};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT   DOMAIN          235..325
FT                   /note="BRCT"
FT                   /evidence="ECO:0000259|PROSITE:PS50172"
FT   DOMAIN          456..664
FT                   /note="UmuC"
FT                   /evidence="ECO:0000259|PROSITE:PS50173"
FT   REGION          1..24
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          42..75
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          89..197
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          359..405
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          879..902
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          941..969
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        56..75
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        107..126
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        127..149
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        152..168
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        169..197
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        360..405
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1148 AA;  127162 MW;  95849D2D751A584A CRC64;
     MPSNSPPAKK KSVRFHSDIE TTASAHSVSD ILTNLKQRHS VIKPSKTRFG KLSRRSQYGE
     ASTRSTTARV TEQSTPQYKS VLGVLDVLQK NHGTPSTRRK RKSSVSPKAS VLESLDDSAA
     SSSVDDGTSS KRRRESSRHS KKSVLEGLHS DDDGVSSSTN QTIQDGGKVT CKESDDSKAT
     HSHAEGEPST KQTHHDAELS KPFSFHASDI YLTKQSPSIE IAIHSSSTKR KPNYRPDLFF
     AGVVILVNGH TSPDATTLMR LLHKHGGDLE KYETHRVTHI IAECLSTAKA KIYKKQRKPT
     PVCRPEWIVD SVKKGVLLPY ADYLLDDVMD KDTFGTKSVK TFFSENNCNR KAMASCEEAT
     KTGVVSSPKQ AQRSPVEDSN SSPDVTSSKN RWQDTDKGNG NYLLNGQVRT VGNDPNFLDS
     YFSNSRLSYI GSFKQRAKTS TRAARSQPKV GSTKFVLLVD MDCFFASVSL RRYPQYRNQP
     VAVGHTGTVV LPCNYNNQKI VGTNLKNSSS ELSTCNYIAR KFGVRKGMFL GDAIMVCPDL
     IVLPYDFEGY EEVSSIVADE LVRYAQRFHG CLEQVSCDEA YLELNLSPDD CEDSNVEDFV
     KFLAEQIRAY IVNKTECTAS IGIGSNKFLA KLAADKVKPD ASYLVEDWQT FLNGLTLRDL
     PGIGRKFEKK MTPHHLRTVN DIWELGDSAE SILGEIIGRG NALKILQFCG GKDDRAVTPA
     ARKSIGAECN YGVRFDGPYG VDYMLAGLSK EVEKRMTLAE VRGSKLVLKV MKSRDASKQP
     GKFLGHGACD SLSKSIDIPL TRKSDAITAA AMRLFEQLSI DECLIRGMGL VVNSLVTDGD
     ASSKTSPSKL SLWLKKDTTK SNDSPQHEDC HTSRQVSFAI EDNENVRNTD EDGGVDDGNA
     QSSLRTMANH MPTFSQLDQD VLTELPADIL KEVQSIYGRD DFRQASPKTS KHRMTTRSPK
     SKPVAPSLPG QLSVKRMFKL ASVKSGGSQF NTNTVFSLSQ LDCLPFETQL QIANGDDVKI
     SKTNRRKVKH GIDSHHPNEQ GFEDHLSEAA RTNEAEPEID FYQANIVPLE EYILSHPNPS
     TDDVEVVQQF LRVCIKEHRV NDTVIFLRAI KNMSEGWGTP HYIKLKQAVV DETFTSHEVQ
     LDTAWLGL
//
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