ID B8BXL1_THAPS Unreviewed; 1148 AA.
AC B8BXL1;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 67.
DE SubName: Full=REV1 protein {ECO:0000313|EMBL:EED93723.1};
GN ORFNames=THAPSDRAFT_268460 {ECO:0000313|EMBL:EED93723.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED93723.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED93723.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED93723.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
CC -!- SIMILARITY: Belongs to the DNA polymerase type-Y family.
CC {ECO:0000256|ARBA:ARBA00010945}.
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DR EMBL; CM000640; EED93723.1; -; Genomic_DNA.
DR RefSeq; XP_002288287.1; XM_002288251.1.
DR AlphaFoldDB; B8BXL1; -.
DR STRING; 35128.B8BXL1; -.
DR PaxDb; 35128-Thaps268460; -.
DR EnsemblProtists; EED93723; EED93723; THAPSDRAFT_268460.
DR GeneID; 7444747; -.
DR KEGG; tps:THAPSDRAFT_268460; -.
DR eggNOG; KOG2093; Eukaryota.
DR HOGENOM; CLU_276892_0_0_1; -.
DR InParanoid; B8BXL1; -.
DR OMA; AECNYGV; -.
DR Proteomes; UP000001449; Chromosome 3.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0017125; F:deoxycytidyl transferase activity; IBA:GO_Central.
DR GO; GO:0003887; F:DNA-directed DNA polymerase activity; IBA:GO_Central.
DR GO; GO:0070987; P:error-free translesion synthesis; IBA:GO_Central.
DR GO; GO:0042276; P:error-prone translesion synthesis; IBA:GO_Central.
DR CDD; cd17719; BRCT_Rev1; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.40.1170.60; -; 1.
DR Gene3D; 1.10.150.20; 5' to 3' exonuclease, C-terminal subdomain; 1.
DR Gene3D; 3.40.50.10190; BRCT domain; 1.
DR Gene3D; 3.30.1490.100; DNA polymerase, Y-family, little finger domain; 1.
DR InterPro; IPR001357; BRCT_dom.
DR InterPro; IPR036420; BRCT_dom_sf.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR036775; DNA_pol_Y-fam_lit_finger_sf.
DR InterPro; IPR017961; DNA_pol_Y-fam_little_finger.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR001126; UmuC.
DR PANTHER; PTHR45990; DNA REPAIR PROTEIN REV1; 1.
DR PANTHER; PTHR45990:SF1; DNA REPAIR PROTEIN REV1; 1.
DR Pfam; PF16589; BRCT_2; 1.
DR Pfam; PF00817; IMS; 1.
DR Pfam; PF11799; IMS_C; 1.
DR SMART; SM00292; BRCT; 1.
DR SUPFAM; SSF52113; BRCT domain; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF100879; Lesion bypass DNA polymerase (Y-family), little finger domain; 1.
DR PROSITE; PS50172; BRCT; 1.
DR PROSITE; PS50173; UMUC; 1.
PE 3: Inferred from homology;
KW DNA synthesis {ECO:0000256|ARBA:ARBA00022634};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT DOMAIN 235..325
FT /note="BRCT"
FT /evidence="ECO:0000259|PROSITE:PS50172"
FT DOMAIN 456..664
FT /note="UmuC"
FT /evidence="ECO:0000259|PROSITE:PS50173"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 42..75
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 89..197
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 359..405
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 879..902
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 941..969
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 56..75
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 107..126
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 127..149
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 152..168
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 169..197
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 360..405
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1148 AA; 127162 MW; 95849D2D751A584A CRC64;
MPSNSPPAKK KSVRFHSDIE TTASAHSVSD ILTNLKQRHS VIKPSKTRFG KLSRRSQYGE
ASTRSTTARV TEQSTPQYKS VLGVLDVLQK NHGTPSTRRK RKSSVSPKAS VLESLDDSAA
SSSVDDGTSS KRRRESSRHS KKSVLEGLHS DDDGVSSSTN QTIQDGGKVT CKESDDSKAT
HSHAEGEPST KQTHHDAELS KPFSFHASDI YLTKQSPSIE IAIHSSSTKR KPNYRPDLFF
AGVVILVNGH TSPDATTLMR LLHKHGGDLE KYETHRVTHI IAECLSTAKA KIYKKQRKPT
PVCRPEWIVD SVKKGVLLPY ADYLLDDVMD KDTFGTKSVK TFFSENNCNR KAMASCEEAT
KTGVVSSPKQ AQRSPVEDSN SSPDVTSSKN RWQDTDKGNG NYLLNGQVRT VGNDPNFLDS
YFSNSRLSYI GSFKQRAKTS TRAARSQPKV GSTKFVLLVD MDCFFASVSL RRYPQYRNQP
VAVGHTGTVV LPCNYNNQKI VGTNLKNSSS ELSTCNYIAR KFGVRKGMFL GDAIMVCPDL
IVLPYDFEGY EEVSSIVADE LVRYAQRFHG CLEQVSCDEA YLELNLSPDD CEDSNVEDFV
KFLAEQIRAY IVNKTECTAS IGIGSNKFLA KLAADKVKPD ASYLVEDWQT FLNGLTLRDL
PGIGRKFEKK MTPHHLRTVN DIWELGDSAE SILGEIIGRG NALKILQFCG GKDDRAVTPA
ARKSIGAECN YGVRFDGPYG VDYMLAGLSK EVEKRMTLAE VRGSKLVLKV MKSRDASKQP
GKFLGHGACD SLSKSIDIPL TRKSDAITAA AMRLFEQLSI DECLIRGMGL VVNSLVTDGD
ASSKTSPSKL SLWLKKDTTK SNDSPQHEDC HTSRQVSFAI EDNENVRNTD EDGGVDDGNA
QSSLRTMANH MPTFSQLDQD VLTELPADIL KEVQSIYGRD DFRQASPKTS KHRMTTRSPK
SKPVAPSLPG QLSVKRMFKL ASVKSGGSQF NTNTVFSLSQ LDCLPFETQL QIANGDDVKI
SKTNRRKVKH GIDSHHPNEQ GFEDHLSEAA RTNEAEPEID FYQANIVPLE EYILSHPNPS
TDDVEVVQQF LRVCIKEHRV NDTVIFLRAI KNMSEGWGTP HYIKLKQAVV DETFTSHEVQ
LDTAWLGL
//