ID B8C3T4_THAPS Unreviewed; 530 AA.
AC B8C3T4;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE RecName: Full=Nuclease associated modular domain-containing protein {ECO:0000259|SMART:SM00496};
GN ORFNames=THAPSDRAFT_22901 {ECO:0000313|EMBL:EED92180.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED92180.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED92180.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED92180.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED92180.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED92180.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
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DR EMBL; CM000642; EED92180.1; -; Genomic_DNA.
DR RefSeq; XP_002290428.1; XM_002290392.1.
DR AlphaFoldDB; B8C3T4; -.
DR PaxDb; 35128-Thaps22901; -.
DR EnsemblProtists; EED92180; EED92180; THAPSDRAFT_22901.
DR GeneID; 7442277; -.
DR KEGG; tps:THAPSDRAFT_22901; -.
DR eggNOG; ENOG502S59J; Eukaryota.
DR HOGENOM; CLU_514402_0_0_1; -.
DR InParanoid; B8C3T4; -.
DR OMA; RANNENV; -.
DR Proteomes; UP000001449; Chromosome 5.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR InterPro; IPR003611; NUMOD3.
DR Pfam; PF07460; NUMOD3; 3.
DR SMART; SM00496; IENR2; 5.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT DOMAIN 107..123
FT /note="Nuclease associated modular"
FT /evidence="ECO:0000259|SMART:SM00496"
FT DOMAIN 131..147
FT /note="Nuclease associated modular"
FT /evidence="ECO:0000259|SMART:SM00496"
FT DOMAIN 192..208
FT /note="Nuclease associated modular"
FT /evidence="ECO:0000259|SMART:SM00496"
FT DOMAIN 229..245
FT /note="Nuclease associated modular"
FT /evidence="ECO:0000259|SMART:SM00496"
FT DOMAIN 304..322
FT /note="Nuclease associated modular"
FT /evidence="ECO:0000259|SMART:SM00496"
FT REGION 31..142
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 165..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 300..530
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 52..91
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 107..121
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 165..194
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 300..340
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 419..447
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 492..512
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 514..530
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 530 AA; 59377 MW; 0ED486C063B509CD CRC64;
MLVSRSTIND ETLEMKIEVP KTLHMKEINR SSLNGSGDVN GVNGHINGGV NGHVNGDTNG
VETNSASHQL QQPNRVIPIN DSNQQQSDSE EAQEDGGTDV PHPTAAGGYT HTSSSKAKIS
AANKGKTPWN KGKTRSDEVK ARIAEGVRRR NRERFLAKLE EEGITEEEYN QKKKEERRKK
DAERRARRTE KGGYTPTNET KQKISNILKE KYASGEIVRT RRSPSTVRRG FKHSEETKQK
IRESLKKKWA EDEEYRELMT NKTVANNAIG NSPSVRKRIA ETLKKKWEEP EFRAKMMEKF
AHRKQRSASK ATEHRKKISE AMKKKWMDEE YRKRATDGMA KGRESAPPRM VKPVRPKMPK
MVTPLVATTQ LTKSKEATTK TKAKRKKKAS AKKSSKSSGD ASITAVEPIS LSPPKTAPKK
VAKIEEPEPD GSINRLREER RDLYDLLYGD EDEDNVDGAS FEGNSAMSPP LPNMNVNRGM
VGRRLNGEDN PSPRSEGKSV TGEFSSSSIA SLLGDDDDLD EFDPYGLDNF
//
