ID B8C8P3_THAPS Unreviewed; 1660 AA.
AC B8C8P3;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 75.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EED90519.1};
GN ORFNames=THAPSDRAFT_24078 {ECO:0000313|EMBL:EED90519.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED90519.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED90519.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED90519.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED90519.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED90519.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
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DR EMBL; CM000645; EED90519.1; -; Genomic_DNA.
DR RefSeq; XP_002292544.1; XM_002292508.1.
DR STRING; 35128.B8C8P3; -.
DR PaxDb; 35128-Thaps24078; -.
DR EnsemblProtists; EED90519; EED90519; THAPSDRAFT_24078.
DR GeneID; 7450998; -.
DR KEGG; tps:THAPSDRAFT_24078; -.
DR eggNOG; KOG4299; Eukaryota.
DR HOGENOM; CLU_242187_0_0_1; -.
DR InParanoid; B8C8P3; -.
DR Proteomes; UP000001449; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IBA:GO_Central.
DR CDD; cd15504; PHD_PRHA_like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR045876; PRHA-like_PHD-finger.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR001876; Znf_RanBP2.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12628:SF10; C. ELEGANS HOMEOBOX; 1.
DR PANTHER; PTHR12628; POLYCOMB-LIKE TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 2.
DR SMART; SM00547; ZnF_RBZ; 4.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
DR PROSITE; PS01358; ZF_RANBP2_1; 2.
DR PROSITE; PS50199; ZF_RANBP2_2; 3.
PE 4: Predicted;
KW Homeobox {ECO:0000256|ARBA:ARBA00023155};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000001449};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00322}.
FT DOMAIN 235..265
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS50199"
FT DOMAIN 658..687
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS50199"
FT DOMAIN 716..740
FT /note="RanBP2-type"
FT /evidence="ECO:0000259|PROSITE:PS50199"
FT DOMAIN 1273..1331
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 99..130
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 217..237
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 261..315
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 337..358
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 479..512
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 547..655
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 750..798
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 915..980
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1408..1440
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1460..1623
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..29
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 115..130
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 479..500
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 562..576
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 591..614
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 626..640
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 641..655
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 762..796
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 923..938
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1483..1499
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1515..1530
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1547..1570
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1571..1621
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1660 AA; 179633 MW; 66F98464EA9D832A CRC64;
MGNSPSVNNH PQKQGDGNDN DNGPPLQRKL SSSIDRERSG RCPTCGEQTH RVEITTTTSA
DGEGVGRVVS KVKIPLTIDG MVYRGRCLIC LPLPGGGGGS CGGRGKGPAS ALGEDRRESS
SSSSVASSSI DRKISSLGSS SLAVASVPAP APVASSSVSM GGLDLLACAS VEDSSERDVA
SLAPVESKAA ASSAPVASYS AHSRGKKLQK LVAPSSLRSS AAVNDAPAAD ATASTEGEEW
NCTTCSHVNL PHKKRCGKCQ GWRGGFRENI RNTPRKREGS SQQTPSSTKS DNEESRRSRN
RVAPQRFVAR PSKQGLGVDQ GDAIVIAAAN RLDAANVSTT DASGGGSGSE KKGAGENNSA
LVVNSDVTSS SSTGMDTTTN ESNNDAVLLE APVWLDESLL MAGTRVIVSY KGAPFKATVR
KRRIMKEHHQ VLLHYDGNKK SNVHWVPLDR ITDILYEGME EDEYDEEMVT VYAGIKRTTS
SGSNGLKRTN STGSGNRYSR RASNDSHRSA ETSVGRLDSF ALSFEHDNNI IDDAANSAVV
DVGGIMGGVA EPGGKVVSNG VSKRKRSHDS FREEPASKSL KSGSTNKRVF NKNDGSDDEA
ATRIVKRKSN ISPRPRELRP TSKLLAMQAT IASSSKRSTS VDSKKAAKKH GTKSKAAEEG
DWKCGKCGNE VLAVKKRCGN CQSWKGGARE NIRKSVTPSK PKRMPYSREN ASHETPVGSW
HCEKCGVDNL ASKKRCGVCQ GWVGGIRMNI RTKSASPKRK KKASSSSVDI SNDKVKAPKE
KVEVARQSKS RDAVEEDSDD EVNVDDVACC LCKCAVDFSD DFFFMPENTA SNARSDAITA
VKCESPPAGF SVPDARAVQS GDGEAGSAVE EVALNGEAKT GNPFIAHASM KTIICNGEGI
TSNNSEAYVD ESIKADGRKE LQPPTTSDGS SSSLVESSEV ERKPAAKPEV NSEEKSAIGS
IDEDDESEKS EVPPFQLPRR LYDPGNSLIL CDGPAHATRR KSSGGQYKCN RAYHQLCHFI
PVFSVPRGAW RCLVCRYRDE KFLEQNNKGR SNEDSLSDEE LTAIFRCVAA KSPEEATSAV
DANEEPTDQI DIASVEQRFE YMSAPLKAKI LHSELTTRAK SLINTSLSTI RTAEHSIRAF
TETNKARKAL TERMESSLGL PQELIQCFMR IAQSKMRVRE LIFGVEKAIK NRQLHGNLTS
AQEGDNGAEW IDIVSELKQW YLTQQPNDTN KTLFHLLFPE KGGLTRRRLE PRTDESKEEA
ESASNSSGIS LDNLRCVCCF KGTASNENDL LLCDGMGCYR AFHMCCVEPK LTLEDVEDED
ESWFCPLCTA HATLVHHAQK ESLGDEFHIN PPPEEWEVAT DVFPEAELEV RVAQKLKDGE
LDDECNDFLT ETLGIVCAFS RQAAQFEYSD AADEEEDDDF QFGGKGSSDD SDSFDGDSDE
EKQLMCEAIG KDELDALSAC SSANNSDSSG TGKKRQRRSR RKRSSMPGDT SDDEQSKSGD
IGQLDTSNIL FGKRRTTKVD YRKLNDAMFG DVSDDEATAA TSKFDYKPSA RVQSDSGNNS
SDSSSKGSED ESGFNNKKGD LKPIVKAPGR TKEAKKKRAR DSGDEKQPAK KKAKTPDEPA
GETWKCDNCG NNNLAGKKRC SVASCQRWKG GKRMNIRTKK
//