ID B8C8Y1_THAPS Unreviewed; 1664 AA.
AC B8C8Y1;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 61.
DE RecName: Full=UDENN domain-containing protein {ECO:0000259|PROSITE:PS50211};
GN ORFNames=THAPSDRAFT_24097 {ECO:0000313|EMBL:EED89754.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED89754.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED89754.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED89754.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED89754.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED89754.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
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DR EMBL; CM000646; EED89754.1; -; Genomic_DNA.
DR RefSeq; XP_002292558.1; XM_002292522.1.
DR PaxDb; 35128-Thaps24097; -.
DR EnsemblProtists; EED89754; EED89754; THAPSDRAFT_24097.
DR GeneID; 7450796; -.
DR KEGG; tps:THAPSDRAFT_24097; -.
DR eggNOG; KOG2080; Eukaryota.
DR HOGENOM; CLU_003129_0_0_1; -.
DR InParanoid; B8C8Y1; -.
DR OMA; WSHAYIP; -.
DR Proteomes; UP000001449; Chromosome 10.
DR GO; GO:0031410; C:cytoplasmic vesicle; IBA:GO_Central.
DR GO; GO:0032483; P:regulation of Rab protein signal transduction; IBA:GO_Central.
DR Gene3D; 3.30.450.200; -; 1.
DR Gene3D; 3.40.50.11500; -; 1.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR001194; cDENN_dom.
DR InterPro; IPR005112; dDENN_dom.
DR InterPro; IPR043153; DENN_C.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR037516; Tripartite_DENN.
DR InterPro; IPR005113; uDENN_dom.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR12296:SF21; DENN DOMAIN-CONTAINING PROTEIN 3; 1.
DR PANTHER; PTHR12296; DENN DOMAIN-CONTAINING PROTEIN 4; 1.
DR Pfam; PF03455; dDENN; 1.
DR Pfam; PF02141; DENN; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF03456; uDENN; 1.
DR SMART; SM00801; dDENN; 1.
DR SMART; SM00799; DENN; 1.
DR SMART; SM00800; uDENN; 1.
DR PROSITE; PS50211; DENN; 1.
DR PROSITE; PS51375; PPR; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001449};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..20
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 21..1664
FT /note="UDENN domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002866403"
FT DOMAIN 412..989
FT /note="UDENN"
FT /evidence="ECO:0000259|PROSITE:PS50211"
FT REPEAT 1355..1389
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 271..358
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1017..1059
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1291..1315
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 286..354
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1292..1307
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1664 AA; 184460 MW; ED0A0B260BFF020C CRC64;
MTRHSRSLLL LASSITSTSS AFCPIPSPSS ITRAATLAQI TATTQRSMSV LDSFFGKKEF
GGSCVMGDED IMKPKKHGTS EVPVMKNLRW KCDYDTADRI CNFNRHYAEY AGYWVTTSFV
EEAREEEAAK GEITFYDSNT GKPLFVAPKG RDMEAFLKES ASHGWPSFRD EEVVWENNLD
VSRLNATNVW YLKRTKKYKQ STFVVACMVQ RPRSLCFTPT LYHDIHEHCI ELYDNFRILQ
SEPPPFVCTS SPAPSFLHNE RTMATEVNLA PKGSYDDDDH DELNLATSNC NDGILPSHSG
SSREGASPVN FNFNVTTTTT VGASTSRSMD EISPTANRAR TSSNSSSHNP GGSADTRRRI
TKLSKARARE KVPRLVDQSR MSCPFQILLA ILKLDTNDTD RDDANDIGGQ NNNTTTVKTT
IDGSEFTPQI TARYPPVDHE ENPLLAESIT AFCFPSGKIP VVQLASSGVD GGSSFGGGDG
GNACMPKVHY FVTTGERGQS MYGTCLTVWE GHEVTVQVKQ DADNGAGGGK NVPKKSKAER
AMAAPVYNKH DFLTPTKKKH DGSNTSNEEN ATITTQIVYL PKCLVILSMH PYLVAFREYL
TQLHRLSKMS PPITTTTSTD TTTSTISNKR YAMTLPLERY ITNFCSELPA PPPGSFQVQT
TILDSVISIW SPPHNMPIAW VSLPFSHLFQ CLDVENVLTV WTALALERQV LVTSTQLSLL
TTCCEILLSL LFPMKWSHAY IPVLPHFLVP ILSAPMPFLC GIDKRHLAYT LEDLSSECIV
VDLDKNQVSL GVKTPPLPSL PKYIYKSLMK NVEENAGGVY REVRSLRKKD NTSEMGFYLP
PEVKSMADAM WESRLCLFDE AFMLTFTPEE RRKNWLNGDD GSGGGNNSDP TEALRLMTLN
DKQNSRSQSQ WDAVQEAFLD TYCFLLQRYR KYLVFPSKQN EGAYGGAGFR SQEFLAGQRG
DVREFLEELV GSQMFDDFVT KRLYGSGEED ISFFDSAVDG YVKNQSLIAN VSAALSRSGS
SGTLGDGPHK GPGRRIRNLF SGSPSNANGS GGGGEKEPPL LQSARVKRKL KTIVPPEPCG
ADLPDRSVEN ATVVEAAPKG TVDEYLSEDE DGDDYSQGDG LPRVLNVSDA ASIASVSTNA
SKATSTVSKG KVYYHYPTFP ERLDPELFGT PRPMSSAVMA EYDRQRENAG KFRRMATLEE
SESAAVQNVR RSSAITGQAV EKPATSEVTS FTVFFMAFTA VMGKDLMSVD NDSLDILDSK
SILSTYAGPE KEREDENKKI ANLVDEIVMD ADLPQTPKRE KRPHPSLPRN SPARSRFNDK
LSTLKIMEAK ETAKAELGIA FEMLKMMKER GLRADPEAYQ CLIDACGRCG DTDRATQLLS
RMHEDGIVAD GVVYSSLVAA FSADNAWKQA SGEVREELPE WANGASIDMD WNTLKTHKRS
YIDIVKEKFG ATEENGEVHP AGLKNTFNRI MARNKANQQA KKGMAHQNSY TEQFVTDQVL
RQILLGENLL EIVYPDISID TDNEFCPRCN FYLSDDDVVA GWSAGNTQEY KTQCPNCLTN
FVPHFCVQST LPSFVGSRGP SSPLFCERLS PWVLKKELRS VISGGIENLL SPEWREKESK
NAVLWWNLIL SFMRYRFPFT FLLQGSFDTS LIAPTPDDDQ PLSP
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