ID B8CCM8_THAPS Unreviewed; 1116 AA.
AC B8CCM8;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 67.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=THAPSDRAFT_24893 {ECO:0000313|EMBL:EED88805.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED88805.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED88805.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED88805.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED88805.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED88805.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
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DR EMBL; CM000649; EED88805.1; -; Genomic_DNA.
DR RefSeq; XP_002293796.1; XM_002293760.1.
DR AlphaFoldDB; B8CCM8; -.
DR STRING; 35128.B8CCM8; -.
DR PaxDb; 35128-Thaps24893; -.
DR EnsemblProtists; EED88805; EED88805; THAPSDRAFT_24893.
DR GeneID; 7441802; -.
DR KEGG; tps:THAPSDRAFT_24893; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_281128_0_0_1; -.
DR InParanoid; B8CCM8; -.
DR OMA; CERILLW; -.
DR Proteomes; UP000001449; Chromosome 14.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0006397; P:mRNA processing; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 3.
DR PANTHER; PTHR47932; ATPASE EXPRESSION PROTEIN 3; 1.
DR PANTHER; PTHR47932:SF44; MIOREX COMPLEX COMPONENT 1; 1.
DR Pfam; PF01535; PPR; 7.
DR PROSITE; PS51375; PPR; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT REPEAT 501..531
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 664..698
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 838..875
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 49..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1116 AA; 123379 MW; 1A9E55F526AB3D44 CRC64;
MSFLLKRERT HHSSSSLLEV QLSSNSDIDA NVEELKSIQK KRQAVSFSQV EVKPQPSVRQ
PQQQKQQQPR AQIKRPSLTS IISEPIGTLS SRSLTSLCNS IRYVQKGSSI PSLNTLDRIL
KEIDYWQSNS AVNQSTSKPT YLKPIHVFSV LTALTNDVRN YKQQQKLNVK RSYHNQSHRE
SILDAQGVEK LVNVVTLLKK LLRGEDNNNT GGLNYCDEGC YTKDVPSFAV MIASEASRWE
KTGLDAALLF LDMMEKEEGP RASAWDPRLI GAVLNALSVW GRAEEAQSVL ERATGVRIST
VSSKTASVME SGTSVTSPAG KQLDLSRAGA CYNALLRAWS KRASLLAHEQ QSTNTKFSNF
RKISSKQSTA ALAQARDILL NHMPQLGLPI TNRTCAAVLQ GYATFGMGAE AERVLMEIEA
LLLSPTYSAK SMEESWKSQS TFASSLDVAC YNTVIDAYCQ SFHLKDVACA ERLFAAMKEQ
TPMNISINDS TTFQILPPVH DVISCATVLN CYSKFGMADE AEAVLNSMTQ SNDNGADILP
TLPCYVSVIQ SLEKSASSAA PIRTMALVER MEQSRDRRVV PRPNRVIYNG ALRCMAKHGC
GEEAESLLVK FHSAFPSQPD IYSYTLALRA WERSKDCIEA ARRANLLFDQ MLGRAEEGHL
PHLDVNAYNI LLNCYARAGL ADDAEVLLTR LESDKWISPS SSSYSLVIKA LSRSNALDAV
DRAWQILHRL GYPKRKANRS STSNETEPTF DVSLDTFNAM LRLFAKRGMA SEAEELLGSI
DALVVEGTMR RGGPDVQSYE AVLEAMGRRK EADIPKRAEA LVTRMEVLGE LGGNIQPSLK
AYNTLLNCYA NAGQSGKAEA LLAKLKDMHE SGLSLPPDAV SYGSTIKALV NSGKSQEIAL
TRAEALANAL KIADGADNEI VSAHRLKLYA KWGMGKEAEQ LLRKMEIERQ RGNLLKGPGI
IHYTAVLNAW AKSPDDDAIE KAESLFSEME SNSRLDLDIA AYHGLLLNYS IRGHIKKAEE
LMKRILEDPT LVANKITFTM LINTYCRSKV DYAGERADQL LDKMRELQAA GYANVEPDNI
TYASIIKCIR GTSSEVSAFE KLELMSRLQM ERWPGV
//
