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Database: UniProt
Entry: B8KNN0_9GAMM
LinkDB: B8KNN0_9GAMM
Original site: B8KNN0_9GAMM 
ID   B8KNN0_9GAMM            Unreviewed;       830 AA.
AC   B8KNN0;
DT   03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   03-MAR-2009, sequence version 1.
DT   07-SEP-2016, entry version 52.
DE   RecName: Full=Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};
DE            EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};
GN   Name=rnr {ECO:0000256|HAMAP-Rule:MF_01895,
GN   ECO:0000313|EMBL:EED30714.1};
GN   ORFNames=NOR53_84 {ECO:0000313|EMBL:EED30714.1};
OS   gamma proteobacterium NOR5-3.
OC   Bacteria; Proteobacteria; Gammaproteobacteria.
OX   NCBI_TaxID=566466 {ECO:0000313|EMBL:EED30714.1, ECO:0000313|Proteomes:UP000003977};
RN   [1] {ECO:0000313|Proteomes:UP000003977}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NOR5-3 {ECO:0000313|Proteomes:UP000003977};
RX   PubMed=23705883;
RA   Spring S., Riedel T., Sproer C., Yan S., Harder J., Fuchs B.M.;
RT   "Taxonomy and evolution of bacteriochlorophyll a-containing members of
RT   the OM60/NOR5 clade of marine gammaproteobacteria: description of
RT   Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea
RT   rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of
RT   Chromatocurvus halotolerans.";
RL   BMC Microbiol. 13:118-118(2013).
CC   -!- FUNCTION: 3'-5' exoribonuclease that releases 5'-nucleoside
CC       monophosphates and is involved in maturation of structured RNAs.
CC       {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- CATALYTIC ACTIVITY: Exonucleolytic cleavage in the 3'- to 5'-
CC       direction to yield nucleoside 5'-phosphates. {ECO:0000256|HAMAP-
CC       Rule:MF_01895, ECO:0000256|SAAS:SAAS00089937}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895,
CC       ECO:0000256|SAAS:SAAS00089931}.
CC   -!- SIMILARITY: Belongs to the RNR ribonuclease family. RNase R
CC       subfamily. {ECO:0000256|HAMAP-Rule:MF_01895}.
CC   -!- SIMILARITY: Contains 1 S1 motif domain. {ECO:0000256|HAMAP-
CC       Rule:MF_01895}.
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DR   EMBL; DS999408; EED30714.1; -; Genomic_DNA.
DR   RefSeq; WP_009024812.1; NZ_DS999408.1.
DR   STRING; 566466.NOR53_84; -.
DR   EnsemblBacteria; EED30714; EED30714; NOR53_84.
DR   PATRIC; 36996709; VBIGamPro33483_3162.
DR   eggNOG; ENOG4105C40; Bacteria.
DR   eggNOG; COG0557; LUCA.
DR   OrthoDB; POG091H0219; -.
DR   Proteomes; UP000003977; Unassembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0008859; F:exoribonuclease II activity; IEA:UniProtKB-HAMAP.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-HAMAP.
DR   Gene3D; 2.40.50.140; -; 1.
DR   HAMAP; MF_01895; RNase_R; 1.
DR   InterPro; IPR011129; Cold_shock_prot.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR013223; RNase_B_OB_dom.
DR   InterPro; IPR022966; RNase_II/R_CS.
DR   InterPro; IPR004476; RNase_II/RNase_R.
DR   InterPro; IPR011805; RNase_R.
DR   InterPro; IPR013668; RNase_R_HTH_12.
DR   InterPro; IPR022967; S1_dom.
DR   InterPro; IPR003029; S1_domain.
DR   Pfam; PF08461; HTH_12; 1.
DR   Pfam; PF08206; OB_RNB; 1.
DR   Pfam; PF00575; S1; 1.
DR   SMART; SM00357; CSP; 2.
DR   SMART; SM00316; S1; 1.
DR   SUPFAM; SSF50249; SSF50249; 4.
DR   TIGRFAMs; TIGR00358; 3_prime_RNase; 1.
DR   TIGRFAMs; TIGR02063; RNase_R; 1.
DR   PROSITE; PS01175; RIBONUCLEASE_II; 1.
DR   PROSITE; PS50126; S1; 1.
PE   3: Inferred from homology;
KW   Complete proteome {ECO:0000313|Proteomes:UP000003977};
KW   Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01895,
KW   ECO:0000256|SAAS:SAAS00462075};
KW   Exonuclease {ECO:0000256|HAMAP-Rule:MF_01895,
KW   ECO:0000256|SAAS:SAAS00462115};
KW   Hydrolase {ECO:0000256|HAMAP-Rule:MF_01895,
KW   ECO:0000256|SAAS:SAAS00446781};
KW   Nuclease {ECO:0000256|HAMAP-Rule:MF_01895,
KW   ECO:0000256|SAAS:SAAS00462054};
KW   RNA-binding {ECO:0000256|HAMAP-Rule:MF_01895,
KW   ECO:0000256|SAAS:SAAS00462035}.
FT   DOMAIN      660    741       S1 motif. {ECO:0000259|PROSITE:PS50126}.
SQ   SEQUENCE   830 AA;  91835 MW;  753B3F0E99C85D82 CRC64;
     MSKQRKPRNK PSDPHAGREA EKYDHPIASR EAIMDLLRDA DGPLNQDRIA KSLQLAEDRD
     LEALRRRLRA MQRDGQLHVD RKGAYGLVEA LNLLRCRVQG HRDGYGFAQP ETGEDDLYLS
     AREMRRLFDG DTVLVAVTGV DGRGRSEGKV VEVLERGVTK VVGRYQEESG IGVVLPDNSR
     INQEVLIPPK FKGEAKHGQI VTAEITQYPE GRLGAKGRVT EVLGEHLDPG LEIDISIRSH
     GIPFEWPDAV LDEAGALSEE PEEDDKKYRI DLRKKPFVTI DGEDARDFDD AVYCEKRRLG
     GWRLWVAIAD VSHYVGVRSA LDKEAIERGN SVYFPERVVP MLPEVLSNGL CSLKPEVDRL
     ALAVEMEISG SGELKQFRFC EAVIHSHARL TYTQVAEVLE TGASDAVSRK LVPHLEQLHS
     LYKVLRQARE ERGAIDFETV ETRIIFNAER KIDAIVPVQR NDAHKLIEEC MLCANVAAAR
     FFERHELPVL YRVHEGPGEQ KLENLRAFLG ELGLGLRGGL KPTPEDYQLL IEQISTRDDA
     HIVQTMLLRS LSQAVYQAEN LGHFGLNYPG YAHFTSPIRR YPDLLVHRAI RSVIRSRERS
     KLVNRVRGAS DIPKAQIYPY DDAAMAAFGT RCSLTERRAD EATREVQSWL KCEYLREHVG
     TEFEGVVSAV TGFGLFVELK DLYIEGLVHV TSLPGDYYRF DAAQQRLVGE RTGRSFQLGA
     AIKVLVASVN LDERKIDLEP VSLPESRKRK GSGGGGAKGG AKGASKASTK SSRGGESKQQ
     GKASSDSKAR PGGRNRGAGV ARKRSASASA AKGGGQGGSK GGPKRSPKGS
//
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