GenomeNet

Database: UniProt
Entry: B9F1Q7_ORYSJ
LinkDB: B9F1Q7_ORYSJ
Original site: B9F1Q7_ORYSJ 
ID   B9F1Q7_ORYSJ            Unreviewed;       742 AA.
AC   B9F1Q7;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   24-JAN-2024, entry version 62.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   ORFNames=OsJ_05030 {ECO:0000313|EMBL:EEE56145.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE56145.1};
RN   [1] {ECO:0000313|EMBL:EEE56145.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [2] {ECO:0000313|EMBL:EEE56145.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA   Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA   Kristiansen K., Wong G.K.-S.;
RT   "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL   Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM000139; EEE56145.1; -; Genomic_DNA.
DR   AlphaFoldDB; B9F1Q7; -.
DR   Proteomes; UP000007752; Chromosome 2.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 8.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 7.
DR   Pfam; PF13041; PPR_2; 3.
DR   PROSITE; PS51375; PPR; 7.
PE   4: Predicted;
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          47..81
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          109..144
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          211..241
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          242..276
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          343..377
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          444..478
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          479..514
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          659..709
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   742 AA;  82845 MW;  63A0BDCC76E8E58C CRC64;
     MTHAAHALCN RYAAILSSAA GDGGRTGVRV AGAVHCLILK TFLQAPPTFL LNHLLTAYAK
     SGRLARARRV FDEMPDPNLF TRNALLSALA HSRLVPDMER LFASMPERDA VSYNALITGF
     SSTGSPARSV QLYRALLREE SVRPTRITLS AMIMVASALS DRALGHSVHC QVLRLGFGAY
     AFVGSPLVDM YAKMGLIRDA RRVFQEMEAK TVVMYNTLIT GLLRCKMIED AKGLFQLMVD
     RDSITWTTMV TGLTQNGLQL EALDVFRRMR AEGVGIDQYT FGSILTACGA LAALEEGKQI
     HAYITRTWYE DNVFVGSALV DMYSKCRSIR LAEAVFRRMT CRNIISWTAM IVGYGQNACS
     EEAVRAFSEM QMDGIKPDDF TLGSVISSCA NLASLEEGAQ FHCLALVSGL MRYITVSNAL
     VTLYGKCGSI EDAHRLFDEM SFHDQVSWTA LVTGYAQFGK AKETIDLFEK MLANGLKPDG
     VTFIGVLSAC SRAGLVEKGC DYFDSMQKDH GIVPIDDHYT CMIDLYSRSG RFKEAEEFIK
     QMPHSPDAFG WATLLSSCRL RGNMEIGKWA AENLLETDPQ NPASYVLLCS MHAAKGQWTE
     VAHLRRGMRD RQVKKEPGCS WIKYKNKVHI FSADDQSHPF SSRIYEKLEW LNSKMAEEGY
     KPDVSSVLHD VADADKVHMI SHHSEKLAIA FGLIFVPQEM PIRIVKNLRG NLVYLTLQRR
     LSREEFKEVA IHTQRHWLGC KD
//
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