ID B9FBS8_ORYSJ Unreviewed; 1076 AA.
AC B9FBS8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 53.
DE RecName: Full=Retrotransposon protein, putative, unclassified {ECO:0008006|Google:ProtNLM};
GN ORFNames=OsJ_12548 {ECO:0000313|EMBL:EEE59920.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE59920.1};
RN [1] {ECO:0000313|EMBL:EEE59920.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2] {ECO:0000313|EMBL:EEE59920.1}
RP NUCLEOTIDE SEQUENCE.
RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA Kristiansen K., Wong G.K.-S.;
RT "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000140; EEE59920.1; -; Genomic_DNA.
DR AlphaFoldDB; B9FBS8; -.
DR Proteomes; UP000007752; Chromosome 3.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR CDD; cd01650; RT_nLTR_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR46890; NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED; 1.
DR PANTHER; PTHR46890:SF45; RNA BINDING _ RNA-DIRECTED DNA POLYMERASE; 1.
DR Pfam; PF00078; RVT_1; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
FT DOMAIN 258..381
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|Pfam:PF00078"
FT DOMAIN 705..801
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 923..1045
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 1076 AA; 124054 MW; DCF96173D614FBD5 CRC64;
MKIMRYEEVW ERESSLPEVI QEAWTMGADA STLGDINDKM KVTMTKLVSW SKDKIGNVRK
KIKDLREKLG ELRNIGLLDT DNEVHSVKKE LEEMLHREEI WWKQRSRITW LKEGDLNTRY
FHLKASWRAK KNKIKKLKKN DGSTTMNKKE MKEINRSFFQ QLYTKDDNLN PVNLLNMFHE
KISEQMNADL IKPFTNEEIS DALFQIGPLK APGPDGFPAR FLQRNWGLLK GEVIAAVRNF
FEDEVMQEGV NDTVIVMIPK KNLAEDMKDF RPISLCNVVY KVVAKCLVNR MRPMLQEIIS
EAQSAFIPGR LITDNALIAF ECFHSIKNCK RENQNFCALK LDLSKAYDRV DWEFLNGVME
RLGFCDKWRR WIMMVYQISW KDTKQMASSS LSGFAGQHQE FRICCSRMTV FYSSKRSEFC
PQERQDEIKS ALQVHSSTFE EKYLGLPTPD GRMKAEQFQP INDKLSKRMS DWNEKYMSSG
AKEVLIKSVA QALPTYIMGV FKMTDKFCDD YTRMVRNFWW GHDNGERKVH WIAWEKILYP
KSHGGLGFRD MKCFNQALLA RQAWRLLTSP DSLCARVFKA KYYPNGNLVD TAFPTVSSSV
WKGIQHGLDL LKQGTIWRVG NGHNIKIWRH KWVPHGEHIN VLEKKGRNRL IYVNELINEE
NRCWNETLVR HVLKEEDANE VLKIRLPNHQ MDDFPAWHHE KSGLFTVKSA YKLAWNLSGK
GVVQSSSSTA TSGERKIWSR VWNAKVQAKV KIFIWKLAQD KLPTWENKRR RKIEMNGTCP
VCGTKGENSY HATVECTKAR ALREALRAVW HLPGEDKFLW TGPDWLLILL DGVNEEQRTH
IMYMLWRAWY LRNDLIHGDG RCSIAGSVSF LTSYEEVLLP NRQMPDDIKG KKPMYSEGQK
EKHMAEKQSS GWIAPPDGAA KINVDAGFRM ETGEASAGIV IRDCRGLILL AACKTLHPCS
SAEQAEALAS LEGIRCALQW IHMPVILETD NAEVVARLKT KHSSRSVWEG VIMEAKAAMQ
GLQAVEVAHI KRDSNKVAHT LAQMALSSGN CLEWRLCAPA EILELLNQEC NPHFGH
//
