ID B9FGL8_ORYSJ Unreviewed; 653 AA.
AC B9FGL8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 54.
DE RecName: Full=Retrotransposon protein, putative, unclassified {ECO:0008006|Google:ProtNLM};
GN ORFNames=OsJ_16976 {ECO:0000313|EMBL:EEE62189.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE62189.1};
RN [1] {ECO:0000313|EMBL:EEE62189.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2] {ECO:0000313|EMBL:EEE62189.1}
RP NUCLEOTIDE SEQUENCE.
RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA Kristiansen K., Wong G.K.-S.;
RT "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000142; EEE62189.1; -; Genomic_DNA.
DR AlphaFoldDB; B9FGL8; -.
DR Proteomes; UP000007752; Chromosome 5.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR CDD; cd06222; RNase_H_like; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR044730; RNase_H-like_dom_plant.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR002156; RNaseH_domain.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR026960; RVT-Znf.
DR PANTHER; PTHR33116:SF83; REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR33116; REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED; 1.
DR Pfam; PF13456; RVT_3; 1.
DR Pfam; PF13966; zf-RVT; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
FT DOMAIN 282..378
FT /note="Reverse transcriptase zinc-binding"
FT /evidence="ECO:0000259|Pfam:PF13966"
FT DOMAIN 502..623
FT /note="RNase H type-1"
FT /evidence="ECO:0000259|Pfam:PF13456"
SQ SEQUENCE 653 AA; 75292 MW; 867A91F8ADD1E9B2 CRC64;
MKEAIKSVLQ VQQNTFKDKY LGLPTPSGRM KAGKYQYLMD RLMKRLSDWA EKFLSMGGKE
VLIKSVIQAL PTYVMNVFKL PSGFCEDYMK MIRKFWWGEE KNRRKTHWTS WQQLIKPKSK
GGIGFKDLKI FNQALLARQA WRLIQFLDSL CAKLMKARYF PNGHLIDTVF PTDSSEVWRG
ICHGLELLKK GIIWRIGKGD QLHIWRDNWI PRDHQLRVTG KRTRTCLKWV ADLVSPNNQE
WDEGLIRQIF YPPYVDEILK IKLPESPTDD FLAWHPERLG VFTVRSAYKL GLAEEHRANE
AGACSSNGNG DRVLWKNIWS AQVPQKVCIF AWRLAVERLP TQHNKQKRNI VPSARCEVCG
APREDGFHAT VVCTKAKALR DELRAFWPIP PEDKFVRQGP DWLLLLLDTL DMRNKAQMLL
MLWRAWHLRN NSVHDTGTLT ISGSIRFLQS YVQLLFPIRQ KEDPKGKCAA QVPGRLNQNP
GVTKADCLQI WEPPPEGWAK INVDGAFSMT DNTGGIGVIA RDSEGKALLS SWKYLHRCAD
AEQVEILACY EGMKLAAEWI RKPIILESDC VTVIGRMTAE DEERSRWTFL IRSAKAVMRS
LQEVRIQHRK RECNRVAHEL AQLAKRTAHC AVWRDHVPSC VMQVLKQDCN VIT
//
