GenomeNet

Database: UniProt
Entry: B9FWC4_ORYSJ
LinkDB: B9FWC4_ORYSJ
Original site: B9FWC4_ORYSJ 
ID   B9FWC4_ORYSJ            Unreviewed;       728 AA.
AC   B9FWC4;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   08-NOV-2023, entry version 55.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   ORFNames=OsJ_23658 {ECO:0000313|EMBL:EEE66861.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE66861.1};
RN   [1] {ECO:0000313|EMBL:EEE66861.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [2] {ECO:0000313|EMBL:EEE66861.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA   Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA   Kristiansen K., Wong G.K.-S.;
RT   "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL   Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM000144; EEE66861.1; -; Genomic_DNA.
DR   AlphaFoldDB; B9FWC4; -.
DR   Proteomes; UP000007752; Chromosome 7.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF01535; PPR; 9.
DR   Pfam; PF13041; PPR_2; 1.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   4: Predicted;
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          75..109
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          146..180
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          208..242
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          312..346
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          413..447
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          549..617
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   728 AA;  81114 MW;  F7763757C8E70AFD CRC64;
     MCAARKAAAR LLSPRASTHP FSAALLLRGR AARGGSLEAR LATVPHERAS VLRFWVRRRR
     FHDARGVFDE RPTRTAPVWT LTISGCARRG RYADGMRAFA EMLAEGEATP NAFVLAAVVR
     CCAGMGDVES GKRVHGWMLR NGVHLDVVLC NAVLDMYAKC GQFERARRVF GAMAERDAVS
     WNIAIGACIQ SGDILGSMQL FDESPLRDTT SWNTIISGLM RSGHAADALS HLRRMAQAGV
     VFNHYTYSTA FVLAGMLLLP DLGRQLHGRV LIAALEGDAF VRSSLMDMYC KCGLLEAAAS
     VFDHWSPLTR DMNFAWSTMV AGYVQNGREE EALDLFRRML REGVAADRFT LTSVAAACAN
     VGMVEQGRQV HGCVEKLWYK LDAPLASAIV DMYAKCGNLE DARSIFDRAC TKNIAVWTSM
     LCSYASHGQG RIAIELFERM TAEKMTPNEI TLVGVLSACS HVGLVSEGEL YFKQMQEEYG
     IVPSIEHYNC IVDLYGRSGL LDKAKNFIEE NNINHEAIVW KTLLNASNQQ SAEIYAYLEK
     LVERLKEIGY TSRTDLVVHD VEDEQRETAL KFHSEKLAIA FGIISTPSGT PLRIFKNLRV
     CEDCHEAIKY ISLATGRCWV NPDKEVLAIL QAESKSKQDK SFLTFIDKCI EVCKESREGS
     HLNPSSGLFQ PNEKKDVVLF PFLQAECLDL WAKILNWVIQ AGPTNFEFGD VPKRSYGFLV
     VLHETWQK
//
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