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Database: UniProt
Entry: B9GAD0_ORYSJ
LinkDB: B9GAD0_ORYSJ
Original site: B9GAD0_ORYSJ 
ID   B9GAD0_ORYSJ            Unreviewed;      1013 AA.
AC   B9GAD0;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   28-JUN-2023, entry version 59.
DE   RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN   ORFNames=OsJ_33669 {ECO:0000313|EMBL:EEE51986.1};
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE51986.1};
RN   [1] {ECO:0000313|EMBL:EEE51986.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [2] {ECO:0000313|EMBL:EEE51986.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA   Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA   Kristiansen K., Wong G.K.-S.;
RT   "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL   Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; CM000148; EEE51986.1; -; Genomic_DNA.
DR   AlphaFoldDB; B9GAD0; -.
DR   HOGENOM; CLU_2475533_0_0_1; -.
DR   Proteomes; UP000007752; Chromosome 11.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR33304; -; 1.
DR   PANTHER; PTHR33304:SF9; RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN; 1.
DR   Pfam; PF00628; PHD; 1.
DR   SMART; SM00249; PHD; 2.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR   PROSITE; PS50016; ZF_PHD_2; 1.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00146}.
FT   DOMAIN          65..116
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   REGION          1..47
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          157..207
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          319..417
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          576..627
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        7..42
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        334..361
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        403..417
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        578..627
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1013 AA;  110797 MW;  AC3FBECFE3E35C8F CRC64;
     MELYDLTGGC AERRLHGDGE PPGPRRSKGL GENLRGEEER LVSNAQENNV TYVDSSSEES
     EDQQVKICDI CGDVGEEKKL AICSRCNDGA EHIYCMRVMM PEVPEGDWFC EECRTEMQIE
     KEKSILEKSQ VKVSTISVGS KVKAANVSSK DLNVSNISSK STKEDAEEGI VPSGCTSTGK
     EEDGRSCIGG SEAANKNEEQ TSSGRNDDFN LKILDGERHM QSHNNDVPFT SVAHDISNMA
     VKNKSSIKSE VKSSEEVEDV KVCDICGDIG AEEKLAVCSR CNDGAEHIYC MRVMMQEVPK
     AKWLCETCHS EVESEKRKNK IETSELKVGG SKGPMNKPSS SENGVDAENV GSNMSNRGNE
     MNSVNKRKDG DAGITSLVRQ NPVSRESSFK LDGKKGKDPA GHVSTLLTSN YPKNQMAPLR
     GQLSKSTSFN NSKVPKVKQL LNEVPQKPKT FKDSLSTPMR KEGPMGILAK SASFKKPKCF
     EPVNKAKPST VMNPLVSENA RNDILTSILG SRSLTGSVTV PVHSKAQSSA QHLNKGNRMA
     DSNILGTSGG EGHCGIKKPP HTKGHANIGM LGSGAQKKTI QVPDSSHLDD QIKSPSSLVP
     SNSSSVSIPG SASLRDHQTV PSMRGRSVDS ISAMSKDMKE KKITFSSQSF SPSCKHIAST
     IPELDYIWRG GFELSRTVRS PVLCEGLQAH LSCFASPKVL EVAKKFPSNV QLEELPRQNL
     WPPQFHDNGP TIDSIALFFF ARDTESYEIH YRKLVENMLK DDLALRGNIE TAELLIFASN
     TLPNNFQRWN MFHFLWGVFR VRRKDANLPP DLPIYDNNQG CSNGVKSLFH PLVGNPLDGQ
     SHDSITAMFP TNNSSAIDDF LPVPTRKDLK LAYSEQKEKM GYPSVGNGCD VNFDVNMKLN
     TCSFSVIHGK GNESTNNKMD NAEHLMDGDS VNATGVSSSN VHTISHVSGG VRKRSVDVAN
     WDDKVNGRPQ HKKIKLDDGG SVSSAHAFMA QKELSKMQQC LRSVGKMSRT KPS
//
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