ID B9GAD0_ORYSJ Unreviewed; 1013 AA.
AC B9GAD0;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 28-JUN-2023, entry version 59.
DE RecName: Full=PHD-type domain-containing protein {ECO:0000259|PROSITE:PS50016};
GN ORFNames=OsJ_33669 {ECO:0000313|EMBL:EEE51986.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EEE51986.1};
RN [1] {ECO:0000313|EMBL:EEE51986.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [2] {ECO:0000313|EMBL:EEE51986.1}
RP NUCLEOTIDE SEQUENCE.
RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J.,
RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R.,
RA Kristiansen K., Wong G.K.-S.;
RT "Improved gene annotation of the rice (Oryza sativa) genomes.";
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000148; EEE51986.1; -; Genomic_DNA.
DR AlphaFoldDB; B9GAD0; -.
DR HOGENOM; CLU_2475533_0_0_1; -.
DR Proteomes; UP000007752; Chromosome 11.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR33304; -; 1.
DR PANTHER; PTHR33304:SF9; RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 2.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 65..116
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 1..47
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 157..207
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 319..417
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 576..627
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 7..42
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 334..361
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 403..417
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 578..627
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1013 AA; 110797 MW; AC3FBECFE3E35C8F CRC64;
MELYDLTGGC AERRLHGDGE PPGPRRSKGL GENLRGEEER LVSNAQENNV TYVDSSSEES
EDQQVKICDI CGDVGEEKKL AICSRCNDGA EHIYCMRVMM PEVPEGDWFC EECRTEMQIE
KEKSILEKSQ VKVSTISVGS KVKAANVSSK DLNVSNISSK STKEDAEEGI VPSGCTSTGK
EEDGRSCIGG SEAANKNEEQ TSSGRNDDFN LKILDGERHM QSHNNDVPFT SVAHDISNMA
VKNKSSIKSE VKSSEEVEDV KVCDICGDIG AEEKLAVCSR CNDGAEHIYC MRVMMQEVPK
AKWLCETCHS EVESEKRKNK IETSELKVGG SKGPMNKPSS SENGVDAENV GSNMSNRGNE
MNSVNKRKDG DAGITSLVRQ NPVSRESSFK LDGKKGKDPA GHVSTLLTSN YPKNQMAPLR
GQLSKSTSFN NSKVPKVKQL LNEVPQKPKT FKDSLSTPMR KEGPMGILAK SASFKKPKCF
EPVNKAKPST VMNPLVSENA RNDILTSILG SRSLTGSVTV PVHSKAQSSA QHLNKGNRMA
DSNILGTSGG EGHCGIKKPP HTKGHANIGM LGSGAQKKTI QVPDSSHLDD QIKSPSSLVP
SNSSSVSIPG SASLRDHQTV PSMRGRSVDS ISAMSKDMKE KKITFSSQSF SPSCKHIAST
IPELDYIWRG GFELSRTVRS PVLCEGLQAH LSCFASPKVL EVAKKFPSNV QLEELPRQNL
WPPQFHDNGP TIDSIALFFF ARDTESYEIH YRKLVENMLK DDLALRGNIE TAELLIFASN
TLPNNFQRWN MFHFLWGVFR VRRKDANLPP DLPIYDNNQG CSNGVKSLFH PLVGNPLDGQ
SHDSITAMFP TNNSSAIDDF LPVPTRKDLK LAYSEQKEKM GYPSVGNGCD VNFDVNMKLN
TCSFSVIHGK GNESTNNKMD NAEHLMDGDS VNATGVSSSN VHTISHVSGG VRKRSVDVAN
WDDKVNGRPQ HKKIKLDDGG SVSSAHAFMA QKELSKMQQC LRSVGKMSRT KPS
//