ID B9GHC4_POPTR Unreviewed; 455 AA.
AC B9GHC4;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 06-MAR-2013, entry version 24.
DE SubName: Full=Predicted protein;
GN ORFNames=POPTRDRAFT_642017;
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera
OS subsp. trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually;
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D.,
RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J.,
RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M.,
RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J.,
RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B.,
RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K.,
RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L.,
RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D.,
RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M.,
RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C.,
RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S.,
RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C.,
RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G.,
RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K.,
RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H.,
RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E.,
RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T.,
RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nisqually;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S.,
RA Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H.,
RA Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V.,
RA Campbell M., Chalot M., Covert S., Davis J., DiFazio S., Gribskov M.,
RA Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F.,
RA Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J.,
RA Tsai C., Vahala J., Tuskan G., Rokhsar D.;
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the peptidase C1 family.
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DR EMBL; CM000337; EEE83545.1; -; Genomic_DNA.
DR RefSeq; XP_002298740.1; XM_002298704.1.
DR MEROPS; C01.029; -.
DR GeneID; 7492056; -.
DR KEGG; pop:POPTR_642017; -.
DR eggNOG; COG4870; -.
DR HOGENOM; HOG000230773; -.
DR ProtClustDB; CLSN2688498; -.
DR GO; GO:0008234; F:cysteine-type peptidase activity; IEA:UniProtKB-KW.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR InterPro; IPR000118; Granulin.
DR InterPro; IPR025661; Pept_asp_AS.
DR InterPro; IPR000169; Pept_cys_AS.
DR InterPro; IPR025660; Pept_his_AS.
DR InterPro; IPR013128; Peptidase_C1A.
DR InterPro; IPR000668; Peptidase_C1A_C.
DR InterPro; IPR013201; Prot_inhib_I29.
DR PANTHER; PTHR12411; PTHR12411; 1.
DR Pfam; PF00396; Granulin; 1.
DR Pfam; PF08246; Inhibitor_I29; 1.
DR Pfam; PF00112; Peptidase_C1; 1.
DR PRINTS; PR00705; PAPAIN.
DR SMART; SM00277; GRAN; 1.
DR SMART; SM00848; Inhibitor_I29; 1.
DR SMART; SM00645; Pept_C1; 1.
DR PROSITE; PS00640; THIOL_PROTEASE_ASN; 1.
DR PROSITE; PS00139; THIOL_PROTEASE_CYS; 1.
DR PROSITE; PS00639; THIOL_PROTEASE_HIS; 1.
PE 3: Inferred from homology;
KW Complete proteome; Hydrolase; Protease; Reference proteome;
KW Thiol protease.
SQ SEQUENCE 455 AA; 50151 MW; 4381785FDC06F399 CRC64;
MSIIDYNIKH GQVPERTEAE TRRIYEMWLV KHGRAYNALG EKERRFEIFK DNLKFIDEHN
SVGNPSYKLG LNKFADLSND EYRSVYLGTR MDGKGRLLGG PKSERYLFKE GDDLPETVDW
REKGAVAPVK DQGQCGSCWA FSTVGAVEGI NQIVTGNLTS LSEQELVDCD KTYNLGCNGG
LMDYAFDFII ENGGIDTEED YPYKAIDSMC DPNRKNARVV TIDGYEDVPQ NDEKSLKKAV
ANQPVSVAIE AGGRGFQLYQ SGVFTGSCGT QLDHGVVTVG YGTEHGVDYW IVRNSWGPAW
GENGYIRMER DVASTETGKC GIAMEASYPT KKSANPPNPG PSPPSPVNPP PPEKPSSECD
DYYSCPAGST CCCIYQYGDY CFGWGCCPLE SATCCDDHNS CCPHEYPVCD LEAGTCRMSK
SNPFGVKALT RAPARITQSH QLGGRRRAGR RFSPA
//
