ID B9GV25_POPTR Unreviewed; 509 AA.
AC B9GV25;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 78.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=POPTR_002G103600 {ECO:0000313|EMBL:PNT48941.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT48941.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT48941.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM009291; PNT48941.1; -; Genomic_DNA.
DR RefSeq; XP_002301082.1; XM_002301046.2.
DR AlphaFoldDB; B9GV25; -.
DR EnsemblPlants; Potri.002G103600.1.v4.1; Potri.002G103600.1.v4.1; Potri.002G103600.v4.1.
DR GeneID; 7461811; -.
DR Gramene; Potri.002G103600.1.v4.1; Potri.002G103600.1.v4.1; Potri.002G103600.v4.1.
DR KEGG; pop:7461811; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_0_1; -.
DR InParanoid; B9GV25; -.
DR OMA; ASEPCRF; -.
DR OrthoDB; 2056457at2759; -.
DR Proteomes; UP000006729; Chromosome 2.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 2.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 7.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 189..223
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 225..259
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 261..295
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 296..330
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 331..365
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 366..400
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 401..435
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 509 AA; 57878 MW; 703E90C2D6394D02 CRC64;
MNSVKVVICH KHRSFSSLPW ISPLHFLTPK LDPPPKTLLE PRRKPKFISH ETAVNLIKHE
RDPQHALEIF NLVVEQKGFN HNHATYSTII DKLARAKKFQ AVDALLRQMM YETCKFHESL
FLNLMKYFAK SSEFERVVEM FNKIQPIVRE KPSLKAISTC LNLLVESKQV DLLRGFLLDL
NKDHMLKPNT CIFNIFIKYH CKSGDLESAF AVVKEMKKSS ISYPNLITYS TLMDGLCESG
RLKEAIELFE EMVSKDQILP DALTYNVLIN GFSCWGKVDR AKKIMEFMKS NGCSPNVFNY
SALMSGFCKE GRLEEAMDAF EEMKIFGLKQ DTVGYTILIN YFCRFGRIDE AMALLEEMKE
TKCKADIVTV NVLLRGFCGE GRTEEALGML NRLSSEGIYL NKASYRIVLN SLCQKGDLDK
ALELLGLTLS RGFVPHHATS NELLVGLCKA GMADDAVVAL YGLAEMGFKP EQDSWALLVE
FVCRERKLLL AFELLDELTA NECEDFVPS
//