ID B9H5S7_POPTR Unreviewed; 660 AA.
AC B9H5S7;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 80.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=POPTR_005G093100 {ECO:0000313|EMBL:PNT35780.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT35780.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT35780.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
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DR EMBL; CM009294; PNT35780.1; -; Genomic_DNA.
DR RefSeq; XP_002307174.1; XM_002307138.2.
DR AlphaFoldDB; B9H5S7; -.
DR STRING; 3694.B9H5S7; -.
DR EnsemblPlants; Potri.005G093100.3.v4.1; Potri.005G093100.3.v4.1; Potri.005G093100.v4.1.
DR GeneID; 7486382; -.
DR Gramene; Potri.005G093100.3.v4.1; Potri.005G093100.3.v4.1; Potri.005G093100.v4.1.
DR KEGG; pop:7486382; -.
DR eggNOG; KOG4210; Eukaryota.
DR HOGENOM; CLU_030920_1_0_1; -.
DR InParanoid; B9H5S7; -.
DR OrthoDB; 317872at2759; -.
DR Proteomes; UP000006729; Chromosome 5.
DR ExpressionAtlas; B9H5S7; baseline and differential.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR CDD; cd12450; RRM1_NUCLs; 1.
DR CDD; cd12451; RRM2_NUCLs; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR034349; NUCL_RRM1.
DR InterPro; IPR034350; NUCL_RRM2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR PANTHER; PTHR23236:SF11; EUKARYOTIC TRANSLATION INITIATION FACTOR 4B; 1.
DR PANTHER; PTHR23236; EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H; 1.
DR Pfam; PF00076; RRM_1; 2.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR PROSITE; PS50102; RRM; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 391..467
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 493..574
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..33
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 59..385
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 467..489
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 569..660
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..76
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 83..106
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 159..184
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 272..298
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 313..333
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 347..370
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 475..489
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 570..586
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 660 AA; 70073 MW; 8A226265AA6448B7 CRC64;
MGKSSKKSAT KVEAAPAVIP AKAEKKGKNK REAGEAIEKI VSAKKQKKND GVAQAVTKVK
VETKTQKKKK AESSDSDDSS EEEEVKVQPK KAVKSNKPPV KDSSESESDT ESDEEPPAKA
APPAKKEPVA IKNGSNGVAA KKGKDDSSSS ESEDESSDDE DPKNKNLPVG KKVQPVKKDE
SSDSSDEDDS SSDEETGTPA KASLPKKVPA TSAQKKAESS DDSDDSSSDS DESSSEDEGK
TKSATPAASK VQPKKSGDDS SESDSDESDE DDTPAPKAAV TSKKPSETKD SKQNKMDLDE
DDSEDDDSEE SDDEPPKNTK AKATAQKESS SEEESSSSED EEDSEDEKPA KTPKKNVMDT
DVEMADADMK SYVKTPKTPV TPVTSENAGS KTLFVGNLSF QVERADVENF FKEAGEVADV
RFALDADQRF KGFGHVEFTT TEAALKALNF NGKSLLGRDV RLDLARERGE RTSNTPYSKD
SNSFQKGGRG QSQTIFVKGF DKFGAEDEIR SSLQEHFGSC GEISRISIPT DYETGAIKGM
AYLEFNDADA MNKAFELNGS QLGESYLTVD EAKPRTDNRD SRDSGRGGGS GGRFGGGRGS
GGRFGGGRSS GGGRFGGGRS SGGRFDGGRG GRGGRGRGTP YKPSVTAAAS GTKKKFNDED
//
