ID B9HR23_POPTR Unreviewed; 70 AA.
AC B9HR23;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 01-MAY-2013, entry version 23.
DE SubName: Full=Predicted protein;
GN ORFNames=POPTRDRAFT_804101;
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera
OS subsp. trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually;
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D.,
RA Boerjan W., Brun A., Brunner A., Busov V., Campbell M., Carlson J.,
RA Chalot M., Chapman J., Chen G.-L., Cooper D., Coutinho P.M.,
RA Couturier J., Covert S., Cronk Q., Cunningham R., Davis J.,
RA Degroeve S., Dejardin A., dePamphilis C.W., Detter J., Dirks B.,
RA Dubchak I., Duplessis S., Ehlting J., Ellis B., Gendler K.,
RA Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L.,
RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D.,
RA Holt R., Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M.,
RA Jorgensen R., Joshi C., Kangasjaervi J., Karlsson J., Kelleher C.,
RA Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.-C., Locascio P., Lou Y., Lucas S.,
RA Martin F., Montanini B., Napoli C., Nelson D.R., Nelson C.,
RA Nieminen K., Nilsson O., Pereda V., Peter G., Philippe R., Pilate G.,
RA Poliakov A., Razumovskaya J., Richardson P., Rinaldi C., Ritland K.,
RA Rouze P., Ryaboy D., Schmutz J., Schrader J., Segerman B., Shin H.,
RA Siddiqui A., Sterky F., Terry A., Tsai C.-J., Uberbacher E.,
RA Unneberg P., Vahala J., Wall K., Wessler S., Yang G., Yin T.,
RA Douglas C., Marra M., Sandberg G., Van de Peer Y., Rokhsar D.S.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nisqually;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Grigoriev I.V., Terry A., Salamov A.A., Otillar R., Lou Y., Lucas S.,
RA Hammon N., Glavina del Rio T., Detter J., Kalin E., Tice H.,
RA Pitluck S., Chapman J., Putnam N.H., Brunner A., Busov V.,
RA Campbell M., Chalot M., Covert S., Davis J., DiFazio S., Gribskov M.,
RA Gunter L., Hamberger B., Jansson S., Joshi C., Larimer F., Martin F.,
RA Napoli C., Nelson D., Ralph S., Rombauts S., Rouze P., Schrader J.,
RA Tsai C., Vahala J., Tuskan G., Rokhsar D.;
RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000345; EEE87647.1; -; Genomic_DNA.
DR RefSeq; XP_002313692.1; XM_002313656.1.
DR UniGene; Pth.1292; -.
DR ProteinModelPortal; B9HR23; -.
DR EnsemblPlants; POPTR_0009s14080.1; POPTR_0009s14080.1; POPTR_0009s14080.
DR GeneID; 7474985; -.
DR KEGG; pop:POPTR_804101; -.
DR eggNOG; NOG288081; -.
DR HOGENOM; HOG000199698; -.
DR KO; K10845; -.
DR ProtClustDB; CLSN2682265; -.
DR GO; GO:0000439; C:core TFIIH complex; IEA:InterPro.
DR GO; GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro.
DR Gene3D; 3.30.70.1220; -; 1.
DR InterPro; IPR009400; TFIIH_TTDA/Tfb5.
DR Pfam; PF06331; Tbf5; 1.
DR SUPFAM; SSF142897; SSF142897; 1.
PE 4: Predicted;
KW Complete proteome; Reference proteome.
SQ SEQUENCE 70 AA; 7918 MW; C25DFA77F19A4E30 CRC64;
MVNATKGLFI SCDIPMVQFI INLNASLPAL QKFVIHILDS SHMFVQPHVS EMIRSATADF
REQNSYEKPP
//
