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Database: UniProt
Entry: B9IN05_POPTR
LinkDB: B9IN05_POPTR
Original site: B9IN05_POPTR 
ID   B9IN05_POPTR            Unreviewed;       794 AA.
AC   B9IN05;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   11-DEC-2013, sequence version 2.
DT   24-JAN-2024, entry version 85.
DE   RecName: Full=Glycosyl hydrolase family 13 catalytic domain-containing protein {ECO:0000259|SMART:SM00642};
GN   ORFNames=POPTR_018G132500 {ECO:0000313|EMBL:PNS94211.1};
OS   Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS   trichocarpa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX   NCBI_TaxID=3694 {ECO:0000313|EMBL:PNS94211.1, ECO:0000313|Proteomes:UP000006729};
RN   [1] {ECO:0000313|EMBL:PNS94211.1, ECO:0000313|Proteomes:UP000006729}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX   PubMed=16973872; DOI=10.1126/science.1128691;
RA   Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA   Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA   Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA   Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA   Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA   Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA   Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA   Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA   Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA   Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA   Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA   Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA   Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA   Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA   Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA   Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA   Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA   Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA   Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA   Rokhsar D.;
RT   "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL   Science 313:1596-1604(2006).
CC   -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC       {ECO:0000256|ARBA:ARBA00004229}.
CC   -!- SIMILARITY: Belongs to the glycosyl hydrolase 13 family.
CC       {ECO:0000256|ARBA:ARBA00008061}.
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DR   EMBL; CM009307; PNS94211.1; -; Genomic_DNA.
DR   RefSeq; XP_002324659.2; XM_002324623.2.
DR   AlphaFoldDB; B9IN05; -.
DR   STRING; 3694.B9IN05; -.
DR   EnsemblPlants; Potri.018G132500.1.v4.1; Potri.018G132500.1.v4.1; Potri.018G132500.v4.1.
DR   GeneID; 7490462; -.
DR   Gramene; Potri.018G132500.1.v4.1; Potri.018G132500.1.v4.1; Potri.018G132500.v4.1.
DR   KEGG; pop:7490462; -.
DR   eggNOG; KOG0470; Eukaryota.
DR   HOGENOM; CLU_011725_1_1_1; -.
DR   InParanoid; B9IN05; -.
DR   OMA; WVTEMGV; -.
DR   OrthoDB; 610at2759; -.
DR   Proteomes; UP000006729; Chromosome 18.
DR   ExpressionAtlas; B9IN05; baseline and differential.
DR   GO; GO:0019156; F:isoamylase activity; IEA:UniProt.
DR   GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR   GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR   CDD; cd11326; AmyAc_Glg_debranch; 1.
DR   CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR   Gene3D; 3.20.20.80; Glycosidases; 1.
DR   Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR   Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR   InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR   InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR   InterPro; IPR004193; Glyco_hydro_13_N.
DR   InterPro; IPR013780; Glyco_hydro_b.
DR   InterPro; IPR017853; Glycoside_hydrolase_SF.
DR   InterPro; IPR013783; Ig-like_fold.
DR   InterPro; IPR014756; Ig_E-set.
DR   InterPro; IPR048650; ISOA1-3-like_C.
DR   PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR   PANTHER; PTHR43002:SF1; ISOAMYLASE 1, CHLOROPLASTIC; 1.
DR   Pfam; PF00128; Alpha-amylase; 1.
DR   Pfam; PF02922; CBM_48; 1.
DR   Pfam; PF21156; ISOA1-3_C; 1.
DR   SMART; SM00642; Aamy; 1.
DR   SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR   SUPFAM; SSF81296; E set domains; 1.
DR   SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE   3: Inferred from homology;
KW   Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW   Plastid {ECO:0000256|ARBA:ARBA00022640};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   DOMAIN          232..667
FT                   /note="Glycosyl hydrolase family 13 catalytic"
FT                   /evidence="ECO:0000259|SMART:SM00642"
SQ   SEQUENCE   794 AA;  90070 MW;  EDC40FE62FAF12A0 CRC64;
     MNLLHSTSHS VHVLKFISQF RSTPKFCLLK RNVTSNLENF GSNLFSNSTA SISIKAARDG
     VDTAVVVEEE GPKLRKFQVF EGHPSPFGAT VRDGGVNFAI FSANAVSATL CLISLSDLPE
     NRVTEQFFLD PLTNKTGDVW HVHLKGDFKD MLYGYKFDGS FSPEEGHYYD PSQIVLDPYA
     KAVISRGDFG VLGSDDNCWP QMACMIPTAD DKFDWEGDSL LKYPQRDLIL YEMHVRGFTQ
     HESSRTEFPG TYLGVVEKLG HLKELGVNCI ELMPCHEFNE LEYYDYNSVF GDYKVNFWGY
     STVNYFSPMT RYSSAGTLNC GHDAINEFKL LVREAHKRGI EVFMDVVFNH TAEGNERGPI
     LSFKGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVI EMHVDGFRFD
     LASIMTRSSS LWDAVNVFGS PIEGDLVTTG TPLGSPPLIE MMSNDPILRD VKLIAEAWDA
     GGLYQVGMFP HWHIWSEWNG KYRDIVRQFI KGTDGFSGAF AECLCGSPGL YQEGGRKPWN
     SINFVCAHDG FTLADLVTYN EKHNLANGED NNDGENHNNS WNCGQEGELA SISVKKLRKR
     QMRNFFLCLM VSQGVPMIHM GDEYGHTKGG NNNTYCHDNY INYFWWDKKE ESSSDFFRFC
     RLMTKFRHEC ESLGLNDFPT AERLQWHGHA PGTPDWSETS RFVAFTLIDS VKREIYIAFN
     ASHLSVTITL PERPAYRWEP LVDTGKPAPF DFLSGDLPER DTAMKQYSHF LEANLYPMLS
     YSSIILVLLP VDNA
//
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