ID B9IN05_POPTR Unreviewed; 794 AA.
AC B9IN05;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 2.
DT 24-JAN-2024, entry version 85.
DE RecName: Full=Glycosyl hydrolase family 13 catalytic domain-containing protein {ECO:0000259|SMART:SM00642};
GN ORFNames=POPTR_018G132500 {ECO:0000313|EMBL:PNS94211.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNS94211.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNS94211.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|ARBA:ARBA00004229}.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 13 family.
CC {ECO:0000256|ARBA:ARBA00008061}.
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DR EMBL; CM009307; PNS94211.1; -; Genomic_DNA.
DR RefSeq; XP_002324659.2; XM_002324623.2.
DR AlphaFoldDB; B9IN05; -.
DR STRING; 3694.B9IN05; -.
DR EnsemblPlants; Potri.018G132500.1.v4.1; Potri.018G132500.1.v4.1; Potri.018G132500.v4.1.
DR GeneID; 7490462; -.
DR Gramene; Potri.018G132500.1.v4.1; Potri.018G132500.1.v4.1; Potri.018G132500.v4.1.
DR KEGG; pop:7490462; -.
DR eggNOG; KOG0470; Eukaryota.
DR HOGENOM; CLU_011725_1_1_1; -.
DR InParanoid; B9IN05; -.
DR OMA; WVTEMGV; -.
DR OrthoDB; 610at2759; -.
DR Proteomes; UP000006729; Chromosome 18.
DR ExpressionAtlas; B9IN05; baseline and differential.
DR GO; GO:0019156; F:isoamylase activity; IEA:UniProt.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR GO; GO:0043170; P:macromolecule metabolic process; IEA:UniProt.
DR CDD; cd11326; AmyAc_Glg_debranch; 1.
DR CDD; cd02856; E_set_GDE_Isoamylase_N; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR Gene3D; 2.60.40.1180; Golgi alpha-mannosidase II; 1.
DR Gene3D; 2.60.40.10; Immunoglobulins; 1.
DR InterPro; IPR044505; GlgX_Isoamylase_N_E_set.
DR InterPro; IPR006047; Glyco_hydro_13_cat_dom.
DR InterPro; IPR004193; Glyco_hydro_13_N.
DR InterPro; IPR013780; Glyco_hydro_b.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR InterPro; IPR013783; Ig-like_fold.
DR InterPro; IPR014756; Ig_E-set.
DR InterPro; IPR048650; ISOA1-3-like_C.
DR PANTHER; PTHR43002; GLYCOGEN DEBRANCHING ENZYME; 1.
DR PANTHER; PTHR43002:SF1; ISOAMYLASE 1, CHLOROPLASTIC; 1.
DR Pfam; PF00128; Alpha-amylase; 1.
DR Pfam; PF02922; CBM_48; 1.
DR Pfam; PF21156; ISOA1-3_C; 1.
DR SMART; SM00642; Aamy; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF81296; E set domains; 1.
DR SUPFAM; SSF51011; Glycosyl hydrolase domain; 1.
PE 3: Inferred from homology;
KW Chloroplast {ECO:0000256|ARBA:ARBA00022528};
KW Plastid {ECO:0000256|ARBA:ARBA00022640};
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT DOMAIN 232..667
FT /note="Glycosyl hydrolase family 13 catalytic"
FT /evidence="ECO:0000259|SMART:SM00642"
SQ SEQUENCE 794 AA; 90070 MW; EDC40FE62FAF12A0 CRC64;
MNLLHSTSHS VHVLKFISQF RSTPKFCLLK RNVTSNLENF GSNLFSNSTA SISIKAARDG
VDTAVVVEEE GPKLRKFQVF EGHPSPFGAT VRDGGVNFAI FSANAVSATL CLISLSDLPE
NRVTEQFFLD PLTNKTGDVW HVHLKGDFKD MLYGYKFDGS FSPEEGHYYD PSQIVLDPYA
KAVISRGDFG VLGSDDNCWP QMACMIPTAD DKFDWEGDSL LKYPQRDLIL YEMHVRGFTQ
HESSRTEFPG TYLGVVEKLG HLKELGVNCI ELMPCHEFNE LEYYDYNSVF GDYKVNFWGY
STVNYFSPMT RYSSAGTLNC GHDAINEFKL LVREAHKRGI EVFMDVVFNH TAEGNERGPI
LSFKGVDNSV YYMLAPKGEF YNYSGCGNTF NCNHPVVRQF ILDCLRYWVI EMHVDGFRFD
LASIMTRSSS LWDAVNVFGS PIEGDLVTTG TPLGSPPLIE MMSNDPILRD VKLIAEAWDA
GGLYQVGMFP HWHIWSEWNG KYRDIVRQFI KGTDGFSGAF AECLCGSPGL YQEGGRKPWN
SINFVCAHDG FTLADLVTYN EKHNLANGED NNDGENHNNS WNCGQEGELA SISVKKLRKR
QMRNFFLCLM VSQGVPMIHM GDEYGHTKGG NNNTYCHDNY INYFWWDKKE ESSSDFFRFC
RLMTKFRHEC ESLGLNDFPT AERLQWHGHA PGTPDWSETS RFVAFTLIDS VKREIYIAFN
ASHLSVTITL PERPAYRWEP LVDTGKPAPF DFLSGDLPER DTAMKQYSHF LEANLYPMLS
YSSIILVLLP VDNA
//