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Database: UniProt
Entry: B9N0E9_POPTR
LinkDB: B9N0E9_POPTR
Original site: B9N0E9_POPTR 
ID   B9N0E9_POPTR            Unreviewed;       528 AA.
AC   B9N0E9;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   24-JAN-2024, entry version 87.
DE   RecName: Full=phosphoribosylamine--glycine ligase {ECO:0000256|ARBA:ARBA00013255};
DE            EC=6.3.4.13 {ECO:0000256|ARBA:ARBA00013255};
DE   AltName: Full=Glycinamide ribonucleotide synthetase {ECO:0000256|ARBA:ARBA00042242};
DE   AltName: Full=Phosphoribosylglycinamide synthetase {ECO:0000256|ARBA:ARBA00042864};
GN   ORFNames=POPTR_004G225300 {ECO:0000313|EMBL:PNT42652.1},
GN   POPTR_004G225500 {ECO:0000313|EMBL:PNT42654.1};
OS   Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS   trichocarpa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX   NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT42652.1, ECO:0000313|Proteomes:UP000006729};
RN   [1] {ECO:0000313|EMBL:PNT42652.1, ECO:0000313|Proteomes:UP000006729}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}, and
RC   Nisqually-1 {ECO:0000313|EMBL:PNT42652.1};
RX   PubMed=16973872; DOI=10.1126/science.1128691;
RA   Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA   Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA   Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA   Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA   Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA   Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA   Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA   Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA   Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA   Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA   Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA   Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA   Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA   Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA   Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA   Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA   Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA   Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA   Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA   Rokhsar D.;
RT   "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL   Science 313:1596-1604(2006).
RN   [2] {ECO:0000313|EMBL:PNT42652.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Nisqually-1 {ECO:0000313|EMBL:PNT42652.1};
RA   Tuskan G., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U.,
RA   Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L.,
RA   Aerts A., Bhalerao R., Bhalerao R., Blaudez D., Boerjan W., Brun A.,
RA   Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J.,
RA   Chen G., Cooper D., Coutinho P., Couturier J., Covert S., Cronk Q.,
RA   Cunningham R., Davis J., Degroeve S., Dejardin A., Depamphilis C.,
RA   Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B.,
RA   Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L.,
RA   Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R.,
RA   Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R.,
RA   Joshi C., Kangasjarvi J., Karlsson J., Kelleher C., Kirkpatrick R.,
RA   Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.,
RA   Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C.,
RA   Nelson D., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G.,
RA   Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P.,
RA   Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J.,
RA   Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.,
RA   Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G.,
RA   Yin T., Douglas C., Marra M., Sandberg G., Van De Peer Y., Rokhsar D.;
RT   "WGS assembly of Populus trichocarpa.";
RL   Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-
CC       (5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-
CC       diphosphate: step 2/2. {ECO:0000256|ARBA:ARBA00005174}.
CC   -!- SIMILARITY: Belongs to the GARS family.
CC       {ECO:0000256|ARBA:ARBA00038345}.
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DR   EMBL; CM009293; PNT42652.1; -; Genomic_DNA.
DR   EMBL; CM009293; PNT42654.1; -; Genomic_DNA.
DR   RefSeq; XP_006385046.1; XM_006384984.1.
DR   AlphaFoldDB; B9N0E9; -.
DR   STRING; 3694.B9N0E9; -.
DR   GeneID; 18098330; -.
DR   KEGG; pop:18098330; -.
DR   eggNOG; KOG0237; Eukaryota.
DR   HOGENOM; CLU_027420_3_1_1; -.
DR   InParanoid; B9N0E9; -.
DR   OMA; CQAVFCA; -.
DR   OrthoDB; 729at2759; -.
DR   UniPathway; UPA00074; UER00125.
DR   Proteomes; UP000006729; Chromosome 4.
DR   GO; GO:0009507; C:chloroplast; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:InterPro.
DR   GO; GO:0004637; F:phosphoribosylamine-glycine ligase activity; IEA:UniProtKB-EC.
DR   GO; GO:0006189; P:'de novo' IMP biosynthetic process; IEA:UniProtKB-UniPathway.
DR   GO; GO:0009113; P:purine nucleobase biosynthetic process; IEA:InterPro.
DR   Gene3D; 3.40.50.20; -; 1.
DR   Gene3D; 3.30.1490.20; ATP-grasp fold, A domain; 1.
DR   Gene3D; 3.30.470.20; ATP-grasp fold, B domain; 1.
DR   Gene3D; 3.90.600.10; Phosphoribosylglycinamide synthetase, C-terminal domain; 1.
DR   HAMAP; MF_00138; GARS; 1.
DR   InterPro; IPR011761; ATP-grasp.
DR   InterPro; IPR013815; ATP_grasp_subdomain_1.
DR   InterPro; IPR016185; PreATP-grasp_dom_sf.
DR   InterPro; IPR020561; PRibGlycinamid_synth_ATP-grasp.
DR   InterPro; IPR000115; PRibGlycinamide_synth.
DR   InterPro; IPR020560; PRibGlycinamide_synth_C-dom.
DR   InterPro; IPR037123; PRibGlycinamide_synth_C_sf.
DR   InterPro; IPR020559; PRibGlycinamide_synth_CS.
DR   InterPro; IPR020562; PRibGlycinamide_synth_N.
DR   InterPro; IPR011054; Rudment_hybrid_motif.
DR   NCBIfam; TIGR00877; purD; 1.
DR   PANTHER; PTHR43472; PHOSPHORIBOSYLAMINE--GLYCINE LIGASE; 1.
DR   PANTHER; PTHR43472:SF1; PHOSPHORIBOSYLAMINE--GLYCINE LIGASE, CHLOROPLASTIC; 1.
DR   Pfam; PF01071; GARS_A; 1.
DR   Pfam; PF02843; GARS_C; 1.
DR   Pfam; PF02844; GARS_N; 1.
DR   SMART; SM01209; GARS_A; 1.
DR   SMART; SM01210; GARS_C; 1.
DR   SUPFAM; SSF56059; Glutathione synthetase ATP-binding domain-like; 1.
DR   SUPFAM; SSF52440; PreATP-grasp domain; 1.
DR   SUPFAM; SSF51246; Rudiment single hybrid motif; 1.
DR   PROSITE; PS50975; ATP_GRASP; 1.
DR   PROSITE; PS00184; GARS; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|PROSITE-
KW   ProRule:PRU00409}; Ligase {ECO:0000256|ARBA:ARBA00022598};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|PROSITE-
KW   ProRule:PRU00409}; Purine biosynthesis {ECO:0000256|ARBA:ARBA00022755};
KW   Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT   DOMAIN          201..409
FT                   /note="ATP-grasp"
FT                   /evidence="ECO:0000259|PROSITE:PS50975"
SQ   SEQUENCE   528 AA;  55680 MW;  A91C063CCF07C34E CRC64;
     MSCATLNLPP SLKLLNSCFQ PSNKKSCFLS SSFSSVSFVG PLTSYGNKSS WDSCHVIKGL
     RSFPIVFKCV AQKSELSVSV GAGSNIASEK RLVVLVIGGG GREHALCYAL QRSPSCDAVF
     CAPGNAGISN SGNATCIPEL DISDSSAVIS FCRKWGVGLV VVGPEAPLVS GLANDLVKAG
     IPTFGPSAEA AALEGSKNFM KNLCDKYKIP TAKYQTFTDP SSAKQYIEDQ GAPIVIKADG
     LAAGKGVIVA MTLEEAYEAV DSMLVKSVFG SAGCCVVVEE FLEGEEASFF ALVDGENAIP
     LESAQDHKRV GDGDTGPNTG GMGAYSPAPV LTKELQSVVM QTIIHPTVKG MAAEGCKFVG
     VLYAGLMIEK KTGLPKLIEY NVRFGDPECQ VLMVRLESDL AQVLLAASRG ELSGVSLKWS
     PGSAMVVVMA SKGYPGSYEK GTVIQNLEEA ENVAPTVKIF HAGTALNSDG NFIATGGRVL
     GVTATGRDLE EARDRAYQAV EEINWPGGFY RRDIGWRALP QKQLAPKK
//
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