ID B9RPX6_RICCO Unreviewed; 886 AA.
AC B9RPX6;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 61.
DE SubName: Full=Pre-mRNA-processing protein PRP40, putative {ECO:0000313|EMBL:EEF46576.1};
GN ORFNames=RCOM_1137830 {ECO:0000313|EMBL:EEF46576.1};
OS Ricinus communis (Castor bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae;
OC Ricinus.
OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311};
RN [1] {ECO:0000313|Proteomes:UP000008311}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311};
RX PubMed=20729833; DOI=10.1038/nbt.1674;
RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D.,
RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M.,
RA Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J.,
RA Rabinowicz P.D.;
RT "Draft genome sequence of the oilseed species Ricinus communis.";
RL Nat. Biotechnol. 28:951-956(2010).
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DR EMBL; EQ973798; EEF46576.1; -; Genomic_DNA.
DR RefSeq; XP_002515795.1; XM_002515749.2.
DR AlphaFoldDB; B9RPX6; -.
DR STRING; 3988.B9RPX6; -.
DR GeneID; 8286540; -.
DR KEGG; rcu:8286540; -.
DR eggNOG; KOG0155; Eukaryota.
DR InParanoid; B9RPX6; -.
DR OrthoDB; 2882240at2759; -.
DR Proteomes; UP000008311; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0070063; F:RNA polymerase binding; IBA:GO_Central.
DR GO; GO:0003712; F:transcription coregulator activity; IBA:GO_Central.
DR CDD; cd00201; WW; 2.
DR Gene3D; 2.20.70.10; -; 2.
DR Gene3D; 1.10.10.440; FF domain; 5.
DR InterPro; IPR002713; FF_domain.
DR InterPro; IPR036517; FF_domain_sf.
DR InterPro; IPR045148; TCRG1-like.
DR InterPro; IPR001202; WW_dom.
DR InterPro; IPR036020; WW_dom_sf.
DR PANTHER; PTHR15377; TRANSCRIPTION ELONGATION REGULATOR 1; 1.
DR PANTHER; PTHR15377:SF3; WW DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01846; FF; 3.
DR Pfam; PF00397; WW; 1.
DR SMART; SM00441; FF; 5.
DR SMART; SM00456; WW; 2.
DR SUPFAM; SSF81698; FF domain; 5.
DR SUPFAM; SSF51045; WW domain; 2.
DR PROSITE; PS51676; FF; 4.
DR PROSITE; PS01159; WW_DOMAIN_1; 2.
DR PROSITE; PS50020; WW_DOMAIN_2; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008311}.
FT DOMAIN 258..291
FT /note="WW"
FT /evidence="ECO:0000259|PROSITE:PS50020"
FT DOMAIN 316..343
FT /note="WW"
FT /evidence="ECO:0000259|PROSITE:PS50020"
FT DOMAIN 482..536
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 549..604
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 617..671
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT DOMAIN 720..777
FT /note="FF"
FT /evidence="ECO:0000259|PROSITE:PS51676"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 190..244
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 414..481
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 686..709
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 741..767
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 841..886
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 414..448
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 841..869
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 886 AA; 97957 MW; 2EADC73F87C8F9F8 CRC64;
MSSQRQGFAP PNSNPPVPVP GFTPPSFSYN ISQSALHFSA NQQFHSTSDA SASVPQATAL
SSAPIVSHSS STSTKTTSLS SPSFLVPPGL AGTPGPAGSV SCGPMILPPV TVDSATSSVQ
RPVMPTVTHA SNPVVQQQSY HTYPSLPAMA ASAQGLWFHP PQMGGMPRTP FLPYPPAVFP
GSYPLPAHGI SRPSISSPDF QPSGAPPVGI PGANPPSSAA SGHQLMGTPG MQKEIPPPGI
DNRSQIHDFG TKNNAATSDS LDAWTAHKTD AGVVYYYNAV TGVSTYEKPP GFKSEPEKVP
MQPTPVSMEN LAGTDWALIT TNDGKNYYYN NKTKLSSWQI PSEVTELKKK QEAELKEQEM
SVSSSSVLNE KGSVQISLSA PAINTGGRDA TALRASNALG ASSALDLIKK KLQDSGTPVT
SSPAPVSLGI TTPESNGSRA MEATSKGLPS ENSKEKLKDA NGDANASDSS SDSEEEDNGP
TKEECIIQFK DMLKERGIAP FSKWEKVLPK IVFDPRFQAI PSHSARRSLF EHYVKTRAEE
ERKEKRAAQK AAIEGFRQLL EEASEEIDHN TDYQSFRRKW GNDPRFEAVD RKDREHLLHE
RVLPLKKAAQ EKAQAERAAA AASFKSMLQD KGDLTVNSRW SKVKESLRND PRYKSVKHEE
REVLFNEYLS ELKAAEEEAE WKAKVKREEQ EKLKEREREL RKRKEREEQE MERVREKVRR
KEAVASFQAL LVETIKDPQA SWTESKTRLE KDPQGRGTNP NLDPSDTEKL FREHVKMLHE
RCTNEFKALL AEVINAEAAS QKTEDGKTVL DSWTTAKRVL KLDPRYNKMP RKEREVLWRR
HAEDMLRKQK TTLDEKEDKH TDPRGRSSTT DSGRHLSGSK RTHDRR
//
