ID B9SMT8_RICCO Unreviewed; 637 AA.
AC B9SMT8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 51.
DE RecName: Full=XH/XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=RCOM_0470910 {ECO:0000313|EMBL:EEF35059.1};
OS Ricinus communis (Castor bean).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae;
OC Ricinus.
OX NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311};
RN [1] {ECO:0000313|Proteomes:UP000008311}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311};
RX PubMed=20729833; DOI=10.1038/nbt.1674;
RA Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D.,
RA Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M.,
RA Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J.,
RA Rabinowicz P.D.;
RT "Draft genome sequence of the oilseed species Ricinus communis.";
RL Nat. Biotechnol. 28:951-956(2010).
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DR EMBL; EQ974038; EEF35059.1; -; Genomic_DNA.
DR RefSeq; XP_002527307.1; XM_002527261.2.
DR RefSeq; XP_015579755.1; XM_015724269.1.
DR RefSeq; XP_015579756.1; XM_015724270.1.
DR AlphaFoldDB; B9SMT8; -.
DR STRING; 3988.B9SMT8; -.
DR eggNOG; ENOG502QRE8; Eukaryota.
DR InParanoid; B9SMT8; -.
DR OrthoDB; 1112799at2759; -.
DR Proteomes; UP000008311; Unassembled WGS sequence.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 1.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF3; FACTOR OF DNA METHYLATION 1-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
DR Pfam; PF03470; zf-XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Reference proteome {ECO:0000313|Proteomes:UP000008311};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 42..84
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 115..222
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 503..636
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 347..375
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 347..364
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 637 AA; 73893 MW; 70E4F86847ABC1E8 CRC64;
MEYSSDEESD ISESEINDYK EKPYGELKSG KYKVKVNGTL RCPFCAGKKK QDYKYKDLLQ
HATGVGKGSA NRSAKQKANH VALAIYLEND LADESDQSHR PALPKPVNPT PQQVDLFVKP
WMGIVVNIVT EGKDSNALHD NAYWLKKFAQ YKPSEVSTFW SEHEQTGQAV LKFNDDWNGF
MNATEFEKSF ETLHHSKKDW KERKTNPGSS MYGWCARADD HDSEGPIGDF LRKKGKLRTI
SGIVEEATES RNSVVAHLSN KIDQTNKNLD DLQYKYNEKT MSLSRMLEEK DKLHYAFIEE
TRKMQRHARD NVRRILEEQE NLNDELESKK RKLDSWSKEL NKREALTERE RQKLDEEKKK
NDDQNNSLQL ASMEQKKADE NVLRLVEEQK REKEEALNKI LQLEKQLDAK QKLEMEIEEL
KGKLQVIKHL GDQDDAAVQR KMKEMADELE QKEEDFGDME NLHHTLVVKE RQSNDELQDA
RKELIAGLGD MLSSVVRTNI GIKRMGEIDQ KPFLNTCKQK FPLEEAQVQA TTLCSLWQEN
LKDSSWQPFK IVPDAEVEGK VNEIVDEEDE KLQNLKLEWG DEIYNAVVTA LKEINEYNAS
GRYITPELWN FKEGRKATLK EVIGYIVKNI KTLKRKR
//
