ID B9UEN8_9HIV1 Unreviewed; 288 AA.
AC B9UEN8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 24-JAN-2024, entry version 71.
DE SubName: Full=Pol protein {ECO:0000313|EMBL:ACF37730.1};
DE Flags: Fragment;
GN Name=pol {ECO:0000313|EMBL:ACF37730.1};
OS Human immunodeficiency virus 1.
OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes;
OC Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
OX NCBI_TaxID=11676 {ECO:0000313|EMBL:ACF37730.1};
OH NCBI_TaxID=9606; Homo sapiens (Human).
RN [1] {ECO:0000313|EMBL:ACF37730.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=635-3 {ECO:0000313|EMBL:ACF37730.1};
RX PubMed=18931623; DOI=10.1097/QAI.0b013e31818a6561;
RA Brennan C.A., Bodelle P., Coffey R., Devare S.G., Golden A., Hackett J.Jr.,
RA Harris B., Holzmayer V., Luk K.C., Schochetman G., Swanson P.,
RA Yamaguchi J., Vallari A., Ndembi N., Ngansop C., Makamche F., Mbanya D.,
RA Gurtler L.G., Zekeng L., Kaptue L.;
RT "The Prevalence of Diverse HIV-1 Strains Was Stable in Cameroonian Blood
RT Donors From 1996 to 2004.";
RL J. Acquir. Immune Defic. Syndr. 0:0-0(2008).
RN [2] {ECO:0000313|EMBL:ACF37730.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=635-3 {ECO:0000313|EMBL:ACF37730.1};
RA Brennan C.;
RL Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; EU618271; ACF37730.1; -; Genomic_RNA.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0046718; P:viral entry into host cell; IEA:UniProtKB-KW.
DR Gene3D; 1.10.10.200; -; 1.
DR Gene3D; 2.30.30.10; Integrase, C-terminal domain superfamily, retroviral; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR017856; Integrase-like_N.
DR InterPro; IPR036862; Integrase_C_dom_sf_retrovir.
DR InterPro; IPR001037; Integrase_C_retrovir.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR003308; Integrase_Zn-bd_dom_N.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR41694; ENDOGENOUS RETROVIRUS GROUP K MEMBER POL PROTEIN; 1.
DR PANTHER; PTHR41694:SF3; INTEGRASE-RELATED; 1.
DR Pfam; PF00552; IN_DBD_C; 1.
DR Pfam; PF02022; Integrase_Zn; 1.
DR Pfam; PF00665; rve; 1.
DR SUPFAM; SSF50122; DNA-binding domain of retroviral integrase; 1.
DR SUPFAM; SSF46919; N-terminal Zn binding domain of HIV integrase; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS51027; INTEGRASE_DBD; 1.
DR PROSITE; PS50876; ZF_INTEGRASE; 1.
PE 4: Predicted;
KW DNA integration {ECO:0000256|ARBA:ARBA00022908};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Endonuclease {ECO:0000256|ARBA:ARBA00022759};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Multifunctional enzyme {ECO:0000256|ARBA:ARBA00023268};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW RNA-directed DNA polymerase {ECO:0000256|ARBA:ARBA00022918};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Viral genome integration {ECO:0000256|ARBA:ARBA00023195};
KW Virus entry into host cell {ECO:0000256|ARBA:ARBA00023296};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00450}.
FT DOMAIN 3..44
FT /note="Integrase-type"
FT /evidence="ECO:0000259|PROSITE:PS50876"
FT DOMAIN 54..204
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT DOMAIN 223..270
FT /note="Integrase-type"
FT /evidence="ECO:0000259|PROSITE:PS51027"
FT DNA_BIND 223..270
FT /note="Integrase-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00506"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:ACF37730.1"
FT NON_TER 288
FT /evidence="ECO:0000313|EMBL:ACF37730.1"
SQ SEQUENCE 288 AA; 32255 MW; D2AB6A5949A25BA9 CRC64;
FLDGIDKAQE EHERYHSNWR AMAGDFNLPP VVAKEIVASC DKCQLKGEAM HGQVDCSPGI
WQLDCTHLEG KIILVAVHVA SGYIEAEVIP AETGQETAYF ILKLAGRWPV KVIHTDNGSN
FTSAAVKAAC WWANVTQEFG IPYNPQSQGV VESMNKELKK IIGQVRDQAE HLKTAVQMAV
FIHNFKRKGG IGGYSAGERI IDIIATDIQT KELQKQITKI QNFRVYFRDS RDPIWKGPAK
LLWKGEGAVV IQYNSEIKVV PRRKAKIIRD YGKQMAGDDC MAGRQEED
//