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Database: UniProt
Entry: C0HG42_MAIZE
LinkDB: C0HG42_MAIZE
Original site: C0HG42_MAIZE 
ID   C0HG42_MAIZE            Unreviewed;       536 AA.
AC   C0HG42;
DT   05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   05-MAY-2009, sequence version 1.
DT   24-JAN-2024, entry version 77.
DE   SubName: Full=Putative pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:ONM32881.1};
GN   Name=100381451 {ECO:0000313|EnsemblPlants:Zm00001eb135240_P001};
GN   ORFNames=ZEAMMB73_Zm00001d041380 {ECO:0000313|EMBL:ONM32881.1};
OS   Zea mays (Maize).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX   NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN25995.1};
RN   [1] {ECO:0000313|EMBL:ACN25995.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=B73 {ECO:0000313|EMBL:ACN25995.1};
RX   PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA   Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA   Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA   Walbot V., Yu Y.;
RT   "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL   PLoS Genet. 5:E1000740-E1000740(2009).
RN   [2] {ECO:0000313|EMBL:ONM32881.1, ECO:0000313|Proteomes:UP000007305}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb135240_P001,
RC   ECO:0000313|Proteomes:UP000007305};
RC   TISSUE=Seedling {ECO:0000313|EMBL:ONM32881.1};
RG   Maize Genome Sequencing Project;
RA   Ware D.;
RT   "Update maize B73 reference genome by single molecule sequencing
RT   technologies.";
RL   Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EnsemblPlants:Zm00001eb135240_P001}
RP   IDENTIFICATION.
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb135240_P001};
RG   EnsemblPlants;
RL   Submitted (MAY-2021) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
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DR   EMBL; BT061298; ACN25995.1; -; mRNA.
DR   EMBL; CM007649; ONM32881.1; -; Genomic_DNA.
DR   RefSeq; NP_001309741.1; NM_001322812.1.
DR   RefSeq; XP_008673060.1; XM_008674838.1.
DR   RefSeq; XP_008673061.1; XM_008674839.1.
DR   AlphaFoldDB; C0HG42; -.
DR   SMR; C0HG42; -.
DR   IntAct; C0HG42; 5.
DR   STRING; 4577.C0HG42; -.
DR   PaxDb; 4577-GRMZM2G059703_P02; -.
DR   EnsemblPlants; Zm00001eb135240_T001; Zm00001eb135240_P001; Zm00001eb135240.
DR   GeneID; 100381451; -.
DR   Gramene; Zm00001eb135240_T001; Zm00001eb135240_P001; Zm00001eb135240.
DR   KEGG; zma:100381451; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_21_1; -.
DR   InParanoid; C0HG42; -.
DR   OMA; IGGWSRF; -.
DR   OrthoDB; 450729at2759; -.
DR   Proteomes; UP000007305; Chromosome 3.
DR   ExpressionAtlas; C0HG42; baseline and differential.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 4.
DR   PANTHER; PTHR46128:SF346; -; 1.
DR   PANTHER; PTHR46128; MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1; 1.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   PROSITE; PS51375; PPR; 6.
PE   2: Evidence at transcript level;
KW   Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          244..278
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          279..313
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          314..348
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          349..383
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          419..453
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          454..488
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   536 AA;  59765 MW;  2556236F8B349B5F CRC64;
     MAAQRLLFLK CCRGYSTSAE DMVISSLRLI PSPSVSVTNP PPLPTILHST DSPPDPHPPL
     TTMLLSAADR LRGVFLRKPS GRNVLHQALS STGIGATMAL SPEVLANVVN TSNLSGAATV
     TYFDWAVTNS KPPPSVHTCN IVIRALGRKK FFDYLDDALQ IMRRNNIFPD LTTLEIIMDS
     LVAARHVSRA VEVISTDQFG FGIGKTCHRK DAFTILIRCL CRRSHVGLAS SLLQAARKEL
     FGLDSNVYND VMGGWARFGS VDKLQEVWTK MQEDGLVPNE VSHCHLIEGL GRVGQTEDAL
     KAFEYMVHER YGPTTMAYNV LIFNFIHIGD LDSCIKYYKD MLDKNCSPNI ETYSKMIKAF
     LRGRRVADAL QMFDDMLIQG VLPNTGMITS FINPLCTFGP PHAALMIYKK SRKAGCVISL
     KAYKLLLERL AKFGKSGIVL DIWEEMQECG YQPDKEIYEF IVNGLCNVGK VDAAVSVVEE
     SLRNGFCLGR VVYSKLNNKL LEMDKVETAY NLFKKVKHAR ALTNSRNYCR ANGWHF
//
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