ID C0SSQ2_CARNO Unreviewed; 1116 AA.
AC C0SSQ2;
DT 26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 26-MAY-2009, sequence version 1.
DT 24-JAN-2024, entry version 73.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN Name=PHYE {ECO:0000313|EMBL:BAH47478.1};
OS Cardamine nipponica (Bitter-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Cardamineae; Cardamine.
OX NCBI_TaxID=335955 {ECO:0000313|EMBL:BAH47478.1};
RN [1] {ECO:0000313|EMBL:BAH47478.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=19363127; DOI=10.1534/genetics.109.102152;
RA Ikeda H., Fujii N., Setoguchi H.;
RT "Molecular evolution of phytochromes in Cardamine nipponica (Brassicaceae)
RT suggests the involvement of PHYE in local adaptation.";
RL Genetics 182:603-614(2009).
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region.
CC {ECO:0000256|PIRNR:PIRNR000084}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
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DR EMBL; AB438990; BAH47478.1; -; Genomic_DNA.
DR EMBL; AB438991; BAH47479.1; -; Genomic_DNA.
DR AlphaFoldDB; C0SSQ2; -.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT DOMAIN 221..381
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 602..670
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 736..781
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 881..1100
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..25
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 326
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1116 AA; 122881 MW; 6115B6276226ADA2 CRC64;
MGFESSSSAA SNMKPLGDSK PQKSNTAQYS VDAGLFADFD QSVYSGKSFN YSKSVISPHN
HVSDEHITAY LSNIQRGGLV QPFGCLIAVE EPSFRILGVS ENCIEFLGLL SLDSTSQCAE
FNNVKGLIGI DARTLFSPSS GASLSKAASF TEISLLNPVL VHSKTTQKPF YAILHRIDAG
IVIDLEAAKS GDPALTLAGA VQSQKLAVRA ISRLQSLPGG DIGALCDTVV EDVQRLTGYD
RVMVYQFHED DHGEVVSEIR RSDLEPYLGL HYPATDIPQA ARFLFKQNRV RMICDCNATS
VKVVQSEELK RPLCLVNSTL RAPHSCHTQY MANMGSIASL ALAIVVKGKD SSKLWGLVVG
HHCSPRYVPF PLRYACEFLM QAFGLQLQME LQLTSQLAEK KAMRTQTLLC DMLLRDTVSA
IVTQSPGIMD LVKCDGAALY YKGKCWLVGV TPSELQVKDL VNWLVENHGD DSTGLTTDSL
VDAGYPGAIS FGDAICGVAA AGISSKDYLL WFRSNTASAM KWGGAKHHPK NKDDAGRMHP
RSSFKAFLEI AKSRSLPWEI SEIDAIHSLR LIMRESFTSS RPVLSANVVE RDANELTSFV
CEMVRVIETA TAPIFGVDSS GCINGWNNKT AEMTGLQASE AMGKSLANEI VQEESRAALE
SLMCKALQGE EEKNVMLKLR KFGHNNHPDY SSGVCVLVNS CTSRDYTEKI IGVCFVGQDI
TSEKEITDRF IRLQGDYKTI VQSLNPLIPP IFASDEHACC SEWNAAMEKL TGWSKHEVIG
KMLPGEVFGV FCKVKCQDSL TKFLISLYQG IASHDIPESS LVGFFNKEGK YIEASLTANK
STNTEGKVIG CFFFLQIISG DSGLSCPGLK ESAQSLNELT YMKQEIKNPL SGIRFAHKLL
ESSEISETQR KFLETSDACE KQITTIIEGT DLKSIEEGNL KLETEEFRLE DILDSIISQV
MIMLKERNSQ LRVEVTEEIK TLPLYGDRVK LQLILADLLC NIVNHAPFPD SWVGINISPG
HELARDNGRY IHLQFRMTHP GKGLPSEMVS DMFDTREGWV TPDGLGLKLS RKLLEQMNGR
VSYVREDERC FFLVDLQVKT SLGVETNGKE AGSSIK
//
