ID C5CQ54_VARPS Unreviewed; 340 AA.
AC C5CQ54;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 65.
DE SubName: Full=D-xylose ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:ACS21626.1};
DE Flags: Precursor;
GN OrderedLocusNames=Vapar_5024 {ECO:0000313|EMBL:ACS21626.1};
OS Variovorax paradoxus (strain S110).
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Variovorax.
OX NCBI_TaxID=543728 {ECO:0000313|EMBL:ACS21626.1};
RN [1] {ECO:0000313|EMBL:ACS21626.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=S110 {ECO:0000313|EMBL:ACS21626.1};
RG US DOE Joint Genome Institute;
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D.,
RA Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Orwin P.,
RA Leadbetter J.R., Spain J.C., Han J.I.;
RT "Complete sequence of chromosome 1 of Variovorax paradoxus S110.";
RL Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Periplasm {ECO:0000256|ARBA:ARBA00004418}.
CC -!- SIMILARITY: Belongs to the bacterial solute-binding protein 2 family.
CC {ECO:0000256|ARBA:ARBA00007639}.
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DR EMBL; CP001635; ACS21626.1; -; Genomic_DNA.
DR AlphaFoldDB; C5CQ54; -.
DR STRING; 543728.Vapar_5024; -.
DR KEGG; vap:Vapar_5024; -.
DR eggNOG; COG4213; Bacteria.
DR HOGENOM; CLU_037628_13_0_4; -.
DR OrthoDB; 9773673at2; -.
DR GO; GO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell.
DR GO; GO:0048029; F:monosaccharide binding; IEA:InterPro.
DR GO; GO:0015753; P:D-xylose transmembrane transport; IEA:InterPro.
DR CDD; cd19993; PBP1_ABC_xylose_binding-like; 1.
DR Gene3D; 3.40.50.2300; -; 2.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR025997; SBP_2_dom.
DR InterPro; IPR013456; XylF.
DR NCBIfam; TIGR02634; xylF; 1.
DR PANTHER; PTHR30036; D-XYLOSE-BINDING PERIPLASMIC PROTEIN; 1.
DR PANTHER; PTHR30036:SF1; D-XYLOSE-BINDING PERIPLASMIC PROTEIN; 1.
DR Pfam; PF13407; Peripla_BP_4; 1.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 1.
PE 3: Inferred from homology;
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..340
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002947296"
FT DOMAIN 25..280
FT /note="Periplasmic binding protein"
FT /evidence="ECO:0000259|Pfam:PF13407"
SQ SEQUENCE 340 AA; 35877 MW; 2597F3700A4F3E6F CRC64;
MQLKHTLAAM AFGLSAVGAV AQTVVGVSWS NFQEERWKTD EAAIKAQLEK LGAKYISADA
GGSPEKQLGD IEGLMSKGAK ALIVLAMDKD AILPAVTKAT RQKVPVVAYD RLIEAPGVFY
ITFDNVEVGR MEAREVFKVK PKGNYVIIKG SPSDPNADFL RAGQQEVLDA AVKKGDIKIV
GDEYTEGWKP EVAQKNMEQI LTKNANKVDA VVAANDGTAG GAVAALTAKG LRGIPVSGQD
ADFAALNRIA LGTQTATIFK DSRELGREAA SAAIALSQGK PVEKAAPWNS GPKKISLSSR
LLTPVPITRD NLDVVVKAGW IKKDELCKGV PAASAPAACK
//