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Database: UniProt
Entry: C5D1K3_VARPS
LinkDB: C5D1K3_VARPS
Original site: C5D1K3_VARPS 
ID   C5D1K3_VARPS            Unreviewed;       293 AA.
AC   C5D1K3;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 77.
DE   SubName: Full=Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS22773.1};
GN   OrderedLocusNames=Vapar_6210 {ECO:0000313|EMBL:ACS22773.1};
OS   Variovorax paradoxus (strain S110).
OC   Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC   Comamonadaceae; Variovorax.
OX   NCBI_TaxID=543728 {ECO:0000313|EMBL:ACS22773.1};
RN   [1] {ECO:0000313|EMBL:ACS22773.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=S110 {ECO:0000313|EMBL:ACS22773.1};
RG   US DOE Joint Genome Institute;
RA   Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Tice H., Bruce D.,
RA   Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C., Han C.,
RA   Larimer F., Land M., Hauser L., Kyrpides N., Ovchinnikova G., Orwin P.,
RA   Leadbetter J.R., Spain J.C., Han J.I.;
RT   "Complete sequence of chromosome 2 of Variovorax paradoxus S110.";
RL   Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000256|ARBA:ARBA00009437}.
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DR   EMBL; CP001636; ACS22773.1; -; Genomic_DNA.
DR   AlphaFoldDB; C5D1K3; -.
DR   STRING; 543728.Vapar_6210; -.
DR   KEGG; vap:Vapar_6210; -.
DR   eggNOG; COG0583; Bacteria.
DR   HOGENOM; CLU_039613_16_2_4; -.
DR   OMA; VGRCFAK; -.
DR   OrthoDB; 9810065at2; -.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   CDD; cd08422; PBP2_CrgA_like; 1.
DR   Gene3D; 3.40.190.290; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   PANTHER; PTHR30537; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR   PANTHER; PTHR30537:SF5; LYSR_SUBSTRATE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   SUPFAM; SSF53850; Periplasmic binding protein-like II; 1.
DR   SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   3: Inferred from homology;
FT   DOMAIN          1..58
FT                   /note="HTH lysR-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50931"
SQ   SEQUENCE   293 AA;  31405 MW;  C66E594E465F457E CRC64;
     MDLNALTDFA LVAANGGLGK ASRASGRSKA TLSRRIADLE EQLGVRLIER SARGLKLTEA
     GQMLMDRTEG PMHEVADAMT SAREGLSVPR GRLRIASPVL FSQLAMGRIG AEFCAAYPEV
     SCEVVADDRL VDLVEEQFDA AIRINPSPDS SLVGRCFAKD RLVVVAAPSV PMPKRGKGKV
     SAVPGVVATT FQGGNWTLDD GRLVVEPVPR LRLSSFLMIR DAAVAGAGAA LIPQSIAWNQ
     LTRGELVQWG MVSGVEVALW VLHTSRRLPA PKVRAFVDFM CEQYPQGSLV LNG
//
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