ID   C5KM43_PERM5            Unreviewed;       638 AA.
AC   C5KM43;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   27-MAR-2024, entry version 41.
DE   SubName: Full=Retrovirus polyprotein, putative {ECO:0000313|EMBL:EER14462.1};
DE   Flags: Fragment;
GN   ORFNames=Pmar_PMAR021216 {ECO:0000313|EMBL:EER14462.1};
OS   Perkinsus marinus (strain ATCC 50983 / TXsc).
OC   Eukaryota; Sar; Alveolata; Perkinsozoa; Perkinsea; Perkinsida; Perkinsidae;
OC   Perkinsus.
OX   NCBI_TaxID=423536 {ECO:0000313|Proteomes:UP000007800};
RN   [1] {ECO:0000313|EMBL:EER14462.1, ECO:0000313|Proteomes:UP000007800}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 50983 / TXsc {ECO:0000313|Proteomes:UP000007800};
RA   El-Sayed N., Caler E., Inman J., Amedeo P., Hass B., Wortman J.;
RL   Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; GG674250; EER14462.1; -; Genomic_DNA.
DR   RefSeq; XP_002782667.1; XM_002782621.1.
DR   AlphaFoldDB; C5KM43; -.
DR   EnsemblProtists; EER14462; EER14462; Pmar_PMAR021216.
DR   GeneID; 9044989; -.
DR   InParanoid; C5KM43; -.
DR   OrthoDB; 3183727at2759; -.
DR   Proteomes; UP000007800; Unassembled WGS sequence.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR   Gene3D; 1.10.340.70; -; 1.
DR   Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR   InterPro; IPR001584; Integrase_cat-core.
DR   InterPro; IPR041588; Integrase_H2C2.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   PANTHER; PTHR37984; PROTEIN CBG26694; 1.
DR   PANTHER; PTHR37984:SF13; RIBONUCLEASE H; 1.
DR   Pfam; PF17921; Integrase_H2C2; 1.
DR   Pfam; PF00665; rve; 1.
DR   SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR   PROSITE; PS50994; INTEGRASE; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000007800}.
FT   DOMAIN          110..266
FT                   /note="Integrase catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50994"
FT   REGION          502..638
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        508..596
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         638
FT                   /evidence="ECO:0000313|EMBL:EER14462.1"
SQ   SEQUENCE   638 AA;  71232 MW;  BB34C58F5A8C4F7A CRC64;
     MKDPAFRPYR KLWSVLFLDE SGLLVRMVKY LPEDEKHFVP VIPDSMRRPL LYKFHDMGGH
     FGKQHMWDRM RRLCFWPGMH VDITDYVAQC SRCLTIKARQ QPPAALVPFP VGAPWHTIAV
     DFLFVGPSDQ GPTKLLVIVD HFTRWADAYV VKGEGATDAL APLLQLCSQF GPPTRLLSDQ
     GPAFESEIFH DVMKILGVTK VRSSPHHPSS NGHVERFNST ILNLLRTVTQ TIGDWQGHLR
     GVLWQYNSTP HSATGFTPFY LMFGREAPQM LLPSLYQYSS LMHDPQSYAA YLARARAKID
     DVMDEWATAN GASYRLAALR QPSHRRHYVG QRVRLKIFHG NNAPARKLLP KWQADWYIFK
     FVAGSNNKTV VVRHFPDLQE KVISTDYILA DPVQPEMIPV QLNIVRMEPP VDEAPRVPLY
     PFKEIPRTDP VLQEDHLDHF ADSDEVSSYV AEMGSPSHDR PYQPQPSAYW VAQDDTDVLQ
     PLPQVGEVRS PRDGDMLIEE ASGPAIPSLP SENPSLLPSE GLSSSRRSHP VLQSGRSAGS
     SPDDNGSIAD ASARSVGSRP SSSARSQMLS AISAGSSGSN IPHVSSGITD QQDRSPQVLE
     PAVLPESVPP GSPPPRTTRT GRVIRPPQKF SPSWRPSR
//