ID C5LV36_PERM5 Unreviewed; 759 AA.
AC C5LV36;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 49.
DE SubName: Full=Gag/pol/env polyprotein, putative {ECO:0000313|EMBL:EEQ99404.1};
GN ORFNames=Pmar_PMAR012068 {ECO:0000313|EMBL:EEQ99404.1};
OS Perkinsus marinus (strain ATCC 50983 / TXsc).
OC Eukaryota; Sar; Alveolata; Perkinsozoa; Perkinsea; Perkinsida; Perkinsidae;
OC Perkinsus.
OX NCBI_TaxID=423536 {ECO:0000313|Proteomes:UP000007800};
RN [1] {ECO:0000313|EMBL:EEQ99404.1, ECO:0000313|Proteomes:UP000007800}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 50983 / TXsc {ECO:0000313|Proteomes:UP000007800};
RA El-Sayed N., Caler E., Inman J., Amedeo P., Hass B., Wortman J.;
RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; GG685747; EEQ99404.1; -; Genomic_DNA.
DR RefSeq; XP_002766687.1; XM_002766641.1.
DR AlphaFoldDB; C5LV36; -.
DR EnsemblProtists; EEQ99404; EEQ99404; Pmar_PMAR012068.
DR GeneID; 9045757; -.
DR InParanoid; C5LV36; -.
DR OrthoDB; 950328at2759; -.
DR Proteomes; UP000007800; Unassembled WGS sequence.
DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR33064; POL PROTEIN; 1.
DR PANTHER; PTHR33064:SF36; RT_RNASEH_2 DOMAIN-CONTAINING PROTEIN-RELATED; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50878; RT_POL; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000007800};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 110..124
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 226..414
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT REGION 29..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 759 AA; 84168 MW; E4F9B255C8B460EA CRC64;
MRESGLALRV LPKAELSALE SEALDQRGVG PELYYSPSGN PNVNPHAPQG LAKSGDTDQK
QPDGSRKARN KKKHKVVDGK FSQGSAKPTK VDVKNNKRDP KKVLAFKEGR CFDCNEKGHR
ASECLKRVVE SSVAIEKDGS PQQDQCGDPQ CTSHFVSTAV AVSYAVPASS GDGHNSIAGK
VASLGLISVK QNAGDQLPPL PVANIECKKR HPTIRHRGYP LAPEKRRIAE ETLRDYEKKG
YIEFIDKDGP PDQWISPCFL KRKKSDAWRL LTDLRSVNKR LPIPRWATSF ASLDVKDAFY
TVRVSHQSSE LLGATVGYHT FRWKVLAQGL CTAPYWWSRQ IHWILSGISE LDKFKGRVVV
LTFVDDILIC GDAVETTRAV LEIICKRLAD YHIPISPEKT QPPTDIIGFL GMRLSSNGWQ
PEPAAVAALE SLPRTLNKQQ LQSVLGTINY LRAAYGQGEL QVNLAPLQDI LGKNKPYKWT
DLHDAALDWL RSALRQHVFD FQPIDSELEE GEGFVLQTDA SDCGISYVLW RVRFGECPGA
LSEMGDLNSE YSGPTPDILA EHGAVLMVGS RRLRGHEKRY ATFDCEGLAL VEGLRRARLL
LLIATKSGRR APVVVQSDSA VAIHKVQAVP DYSEFTRNQV RYKRWCRWVE SVVDVLPFVR
IFHCRGSQNC LSDMFSRVLA EADTDTMGVY STTAVLVCDN FDNSSLCSEE DDEALMNDSL
PTDDGVAVLP VAGQRLEEDV PPELIGLVNS NGVRRVDLD
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