ID C5WUW5_SORBI Unreviewed; 1969 AA.
AC C5WUW5;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 2.
DT 27-MAR-2024, entry version 72.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3001G479900 {ECO:0000313|EMBL:EER95370.2};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER95370.2, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER95370.2, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000760; EER95370.2; -; Genomic_DNA.
DR STRING; 4558.C5WUW5; -.
DR EnsemblPlants; EER95370; EER95370; SORBI_3001G479900.
DR Gramene; EER95370; EER95370; SORBI_3001G479900.
DR eggNOG; KOG3156; Eukaryota.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_006660_0_0_1; -.
DR InParanoid; C5WUW5; -.
DR OMA; MARDEDC; -.
DR Proteomes; UP000000768; Chromosome 1.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR008545; Web.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR Pfam; PF05701; WEMBL; 1.
DR PROSITE; PS51375; PPR; 6.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 204..238
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 305..339
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 407..441
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 609..643
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 707..741
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 808..842
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 1049..1082
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1865..1891
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1355..1410
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1457..1526
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1611..1659
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1699..1740
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1818..1852
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1051..1075
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1865..1882
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1969 AA; 217613 MW; 24AE76918D343FA9 CRC64;
MAIHRSNLSS YFKISRIWHQ LKQYGAKSFA SSSPTSEIAH LKVLTVLLRD TCSLKCLREI
HARLAVAGAI QDRFVVTGLV ERYVSFGKPA SAALLFAEAY RGRPAVYSLN LVVRCFSDHG
FHRELLDLYR GLCGFGSDNF TFPPVIRACT AASCLQLGRQ VHCRVLRTGH GSNVGVQTAL
LDMYAKAGQI DVSRRVFDCM VLRDLISWNA MVSGYSVNGC FREAVETLQE MQQCGMSPNA
STLVGIVGMC GSAGDRVAGD SLHAFALKGG TIDDESLTSA LISMYAAFDD LSSSRLVFDL
QPVKDLVSFN SMISAYMQHS NWKEAFEVFR LMHCAGVGPN LITLVSVLPS CSDLLFGINH
GESVHGMIIK LGLAEQVSVV SALVSMYSKL GKLDSSSLLF CCFTEKNNIL WNSMISGYLV
NNEWNMALDA FCKMQIAGVA PDATTVINVI SGCRYTKDLH VAKSIHAYAV RNRFESYQSV
MNALLAMYAD CGDISTSYTL FQKMEVRMLI SWNTMISGFA EIGDSETSLT LFCQMFHEEV
WFDLVTLIGL ISSLSVSEDA IVGESVHSLA IKSGCISDVS LTNALITMYA NCGIVEAGQQ
LFNSFCSRNT ITYNALMSGY RKNNVSEKIL PLFTQMVKND EKPNLVTLLN LLPVCQSQLQ
GKCIHSYAVR NFTRLETPLF TSAMGMYSRF NNIEYCRTIF SLVSARNLIV WNAFLSACVQ
CKQADMVVDY FKHMLFLNVR PDEVTMLALI SACSQLGNAD FAACIMAVIL QKGFSMNILV
LNALIDTHSR CGSISFAREL FDSSVEKDSV TWGAMINAYS MHGNGEAALD LFSMMIDSGV
DPDDITFVSI LSACSHNGLV EQGRTLFKSL QADHGITPRM EHYACMVDLL GRTGHLDEAY
DIVRSMPFTP SDNLLESLLG ACRFHGNYKI GESVGKLLIK SEYGKSRSYV MLSNIYASAG
KWSDCEQLRL DMEAKGLRKN VGVRKLESQG VPTKQAEVIT STITEVLNDS LESITESFVS
KAEMQSSSVS NKFVELRLER MADKKIEGAD SSHIVSSTKS LQSSVGPNLI EGTDEDDSNN
LQKTQEHPLG LVLENKSNLQ EISVEQKIPT GVSDLSPKVD SSELPCSIEV HDGIPSSSKA
NEPMEAQDDS NTAICMFEAS KQQECPISLI LTDKKGNLQE VSVEQNVPCG DYVALSPKAD
GGELTSTNEV PEGFLTSSSR AYESREAQDD SITMDASEVN VCAASYSTLR LIEGVQDEAS
CIDFGKVTCE TPPAILERVK EDKPLVVHRF HKRQMSLGDT QQKVHAPVSR SNTSKHLRMD
KTIVDTTSPI ESVKVAASKF GGSINWKTHR TQTELESDHI ELDKLKNEIS ECKHQAEVAE
ASKLSVLNEL ERTKKLVNEM KHVLEREQAE EVDVMEDLEL VQFILQAMEG VACNDSAVVG
EKLNNIQERH KPLIAKVMSV KDELRKVQKD YDSLLIETDI SINKAQTAFT MSKDAEKEVE
ELTIELQRLK EVFDLANATC QDAEERKKNT LMARDEDCLS WEKDLRQSDK ELNQISLDLC
SFQELQSKYD TSAIMLLSLK NELAACLGAK PIGEAQEQES GTHKPMQEEV IIMLKNDLEE
HRKSIAKVTD ELCVLKATAE LLKSQLNEEK AALAATQQVE AMASTTIQSL KMDIKLSQQE
LEAVHVKSKE CRDRMDKVLQ DASQEVDEAK IIATKAREEL RKTKEEVEQA KAALSTMEFK
LEAVLRDIQA AKESERLALN TLRTLEDSKV SVNVKQGSSQ MITLDLDDYT SLIKKSRQAE
EPVHEKTAAA IAQVEVAKES ESRTLSRLDE IFKALEEQMQ ALAAAAEQAG RATEGKVAME
QELRKWREEN GKRRHKASEA PKPEARASSS AAVAEIVGGE TTCTGKEDSC PAASVHPVWD
ASRRSSPNDV ALQAKTKKAK KLAFFPRVNM FLGCWSGRAS ELRSLSFRM
//
