ID C5X263_SORBI Unreviewed; 668 AA.
AC C5X263;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 67.
DE RecName: Full=Zinc finger PHD-type domain-containing protein {ECO:0000259|SMART:SM00249};
GN ORFNames=SORBI_3002G221000 {ECO:0000313|EMBL:EER96823.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER96823.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER96823.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000761; EER96823.1; -; Genomic_DNA.
DR RefSeq; XP_002460302.1; XM_002460257.1.
DR AlphaFoldDB; C5X263; -.
DR STRING; 4558.C5X263; -.
DR EnsemblPlants; EER96823; EER96823; SORBI_3002G221000.
DR Gramene; EER96823; EER96823; SORBI_3002G221000.
DR eggNOG; KOG1844; Eukaryota.
DR HOGENOM; CLU_012141_0_0_1; -.
DR InParanoid; C5X263; -.
DR OMA; EIYWGLR; -.
DR OrthoDB; 455444at2759; -.
DR Proteomes; UP000000768; Chromosome 2.
DR GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0048655; P:anther wall tapetum morphogenesis; IEA:EnsemblPlants.
DR GO; GO:0071367; P:cellular response to brassinosteroid stimulus; IEA:EnsemblPlants.
DR GO; GO:0055046; P:microgametogenesis; IEA:EnsemblPlants.
DR GO; GO:0009846; P:pollen germination; IEA:EnsemblPlants.
DR GO; GO:0010208; P:pollen wall assembly; IEA:EnsemblPlants.
DR GO; GO:0045893; P:positive regulation of DNA-templated transcription; IEA:EnsemblPlants.
DR GO; GO:0043068; P:positive regulation of programmed cell death; IEA:EnsemblPlants.
DR CDD; cd15556; PHD_MMD1_like; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR020549; YbeY_CS.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46201; PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED; 1.
DR PANTHER; PTHR46201:SF1; PHD FINGER PROTEIN MALE STERILITY 1; 1.
DR Pfam; PF00628; PHD; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS01306; UPF0054; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 611..657
FT /note="Zinc finger PHD-type"
FT /evidence="ECO:0000259|SMART:SM00249"
SQ SEQUENCE 668 AA; 73244 MW; BF408EC7D95328C2 CRC64;
MAAANKTMVI SLGSSRRRKR GEMLFRFESF CQPGYPAPLA GGGAFRDNVR ALLGLAHLEA
GGAHGDTKCW SFQLELHRHP PTVVRLFVVE EVVDASPQRQ CLLCRHVGWG RHLICTKRFH
FVLPKRELSV EADGLHYGIN HGPEKPSKGT ATSRGHLLHG VVHLNGFGHL VALHGFEGGS
EFVAGHQIMD LWDRICSSLN VRKVSLVDTA RKGHMELRLL HGVAYGDTWF GRWGYRFGRP
SYGVALPSYQ QSLHALQSVP LCVLVPHLSC FSQDLPVVVT KYQAISGHKL LNLGDLLRFM
LELRTRLPAT SVTAMDYRGI MSEASCRWSA KRVDMAARAV VDALRRTEPP ARWVTRQEVR
DAARAYIGDT GLLDFVLKSL GNHIVGNYVV RRAMNPVTKV LEYCLEDVSS VLPAVGGGGG
KMRVRFQLTR AQLMRDLTHL YRHVLREPSQ ALTTGAFGAI PVAARMVLDT KHFVKDYHEG
FAPINSVGAG HVHMNLCCTL LVRNGSPELV APPYETVTLP AHATVGELKW EVQRLFREMY
LGLRTFTAES VAGVGVSKDA CPVLGLIDVG SAVVIEGTVV EQQQLADEGV QPGNEAAAVS
EGGGDSERIV DCACGADDED GERMACCDIC EAWQHTRCAG IKDTDDAPHV FVCNRCDNDV
LSFPPLSC
//
