ID C5X4X6_SORBI Unreviewed; 745 AA.
AC C5X4X6;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 74.
DE RecName: Full=Pentatricopeptide repeat-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3002G411700 {ECO:0000313|EMBL:EER99887.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EER99887.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EER99887.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000761; EER99887.1; -; Genomic_DNA.
DR RefSeq; XP_002463366.1; XM_002463321.1.
DR AlphaFoldDB; C5X4X6; -.
DR EnsemblPlants; EER99887; EER99887; SORBI_3002G411700.
DR GeneID; 8078524; -.
DR Gramene; EER99887; EER99887; SORBI_3002G411700.
DR KEGG; sbi:8078524; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_15_6_1; -.
DR InParanoid; C5X4X6; -.
DR OMA; HGQRCHS; -.
DR OrthoDB; 608851at2759; -.
DR Proteomes; UP000000768; Chromosome 2.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 2.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF524; OS07G0670000 PROTEIN; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 6.
DR PROSITE; PS51375; PPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 182..216
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 514..548
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 745 AA; 79882 MW; 75A8343D2F2E302D CRC64;
MRRLPLPCPA RATANTAAAH HPFAETAHPP RASAVTPLAA LRGLLQAGLP LSPTAFSAAV
ARSGPDALPA FHALAVASGL AAFAPVTNSL AARYAKGNSF PAAARVFAAA RSRDTRSYNT
ILSATPDPDD ALAFAARMLR TGDVRPDAVT FTVTLSLAAG RGEAHLVRQL HALASRAGIA
TDVFVGNALV TAYSRGGLMD AARKVFEEMP ARDLVSWNAL VCGLAQDGEC SAEVIRVFLR
MLKQGDVRPD RISVCSVIPA CGAEGKLELG RQIHGFAVKL GVEGHVSIAN VLVAMYYKCG
TPGCARRLFE FMGERDVISW TTVMSMDGED AVSLFNGMRR DGVAPNEVTF VAMLSSMPGD
CPAREGQMIH AVCLKTSLSD KAAAANSLIT MYAKLRRMDD ARMIFSLMPH SEIIAWNALI
SGYAQNEMCQ DALEAFLAMM KIMKPNETTF ASILSAVTAV ETVSMAYGQM YHCQALKLGL
GASEYVSGAL IDMYAKRGSL EESWKAFGET VHRSLIAWTA IISANSKHGN YDAVVSLFND
MVGSGVAPDG VVLLSVLTAC RYSGFVSLGR EIFDSMAAKH GAELWPEHYA CVVDMLGRAG
RLEEAEELML QMPSGPSVSA LQSLLGACRI HGNTDVGERV ASVLTETEPT ESGAYVLLSN
IYAEKGDWGA VARVRRQMRE RGVKKEVGFS WVDAGGAGDS LHLYKFSSDD TTHPQSEEIY
RVAEGLGWEM KFLKNCLRVE MECPV
//
