ID C5XKX0_SORBI Unreviewed; 1134 AA.
AC C5XKX0;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 28-JUN-2023, entry version 71.
DE RecName: Full=RRM domain-containing protein {ECO:0000259|PROSITE:PS50102};
GN ORFNames=SORBI_3003G307000 {ECO:0000313|EMBL:EES01518.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES01518.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES01518.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000762; EES01518.1; -; Genomic_DNA.
DR RefSeq; XP_002456398.1; XM_002456353.1.
DR AlphaFoldDB; C5XKX0; -.
DR EnsemblPlants; EES01518; EES01518; SORBI_3003G307000.
DR GeneID; 8079249; -.
DR Gramene; EES01518; EES01518; SORBI_3003G307000.
DR KEGG; sbi:8079249; -.
DR HOGENOM; CLU_009260_0_0_1; -.
DR OrthoDB; 385112at2759; -.
DR Proteomes; UP000000768; Chromosome 3.
DR ExpressionAtlas; C5XKX0; baseline and differential.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd00590; RRM_SF; 2.
DR CDD; cd21546; SPOC_FPA-like; 1.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR012921; SPOC_C.
DR PANTHER; PTHR21494; ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100; 1.
DR PANTHER; PTHR21494:SF2; NUCLEIC ACID BINDING PROTEIN; 1.
DR Pfam; PF00076; RRM_1; 2.
DR Pfam; PF07744; SPOC; 1.
DR SMART; SM00360; RRM; 2.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50102; RRM; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176}.
FT DOMAIN 538..610
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT DOMAIN 702..774
FT /note="RRM"
FT /evidence="ECO:0000259|PROSITE:PS50102"
FT REGION 1..68
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 390..449
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 917..989
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 27..45
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 46..68
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 395..421
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 422..449
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 932..973
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 974..989
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1134 AA; 124265 MW; CF464AC45FDD4B8A CRC64;
MASPAADPQP KKRKVADAQD PSPSSSNPAP ARLPSPAPPP PETLGAAAPS TSTSPPTETA
SQSPEEVRLQ KLRNQEELRN VFQRYNRIRK YIQEHKDGGL TPELEQDYLY LISASRGCES
VQCFLSLPIP RFAPRCPTAL EAATKVTINM YRCNMATVKR GEDLKGVPYK TAKACIIGLT
HICSAASSEE LKSSVMKGIC SVVYRTVLSF FISTLEGKDI YRMDYTKHAM LQDPVTLLET
LKLELDNAKQ PTIDNLSELG AICLLCTFLL FPENILEACF TLLASAECDD VKGEGLYLLN
QLSCHLTCNA ANVAMGMDGN LSDTNKVVDS NLVVSENAME SNECYITMAI SRHPSLRRWI
LSRYRKLCDS CKPAVVSEVS SCLKVLGSLS EPSEDKSHTG NESSVLEKLD NNVRENMRPD
ELISSSEQAL AKTESVNNYG NKSSQNKNVD MVCSDNQKSN VLTDAKLNDF KGRTVVSDAR
HQGTRSDLLM PKAAYDPAGG STSLTSPGQH FGRAKHLFSE PFDIYGTYVA RDVISVSKEL
WVGSLGNRAT ESLVRSKFEE FGPLVNFLFY PSKKFCLVEY RNILHAVHAC GYMQGSSSWG
GFLQIRYLDR LIGSKGFIRG IAIGESRHIY VAKVKNKKDK DEVFDELKMA GLKWPSGITD
ISGENALLLE FETAVDAATA KFYIRHQAPQ DACSRDMNPP GHQLLVQNID HSVPDIDLIN
AFSQFGEVIR NQFNRSDSSC FIVYRSQDAA ARAKSHLHGA RFGLKSLSVE LRTCSAGSVH
DKTVPPVAPL LSQSVPDNSV RHEIRNPRVP GYHAGYAAPG DRPIYGPPPP NTSRAPQGIF
PCPPVSAHHG SVIPPPPIQT SFVRPIYPGP GSPWENTTPN PLPFSHVSPR MMPGSSFRVN
PASLPFIPSC VTPLPQLPGG SAQHSEKMPP SLPLPTIAPP PFTPLDMPPP PPPLPISQPP
LVPPPPNSPP PQPIADSSNS QKSSSHPQWQ GPLLKSGMHY CRIYASRIEL DTCRYENSVS
EPAEWPSELD VTKRSAFQHV KTTFNNTPPN KREVCRLVPC SNVDHKGFRD FISYLVQKDC
AGVIRIPAVK AMWTRILFIL PPTSDTCGMV GIPPVPADTM IVVTLPKETT IEAS
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