GenomeNet

Database: UniProt
Entry: C5XS65_SORBI
LinkDB: C5XS65_SORBI
Original site: C5XS65_SORBI 
ID   C5XS65_SORBI            Unreviewed;       757 AA.
AC   C5XS65;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   24-JAN-2024, entry version 70.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SORBI_3004G007700 {ECO:0000313|EMBL:EES06126.1};
OS   Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX   NCBI_TaxID=4558 {ECO:0000313|EMBL:EES06126.1, ECO:0000313|Proteomes:UP000000768};
RN   [1] {ECO:0000313|EMBL:EES06126.1, ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=19189423; DOI=10.1038/nature07723;
RA   Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA   Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA   Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA   Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA   Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA   Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT   "The Sorghum bicolor genome and the diversification of grasses.";
RL   Nature 457:551-556(2009).
RN   [2] {ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=29161754; DOI=10.1111/tpj.13781;
RA   McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA   Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA   Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT   "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT   a transcriptome atlas, and signatures of genome organization.";
RL   Plant J. 93:338-354(2018).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC       {ECO:0000256|ARBA:ARBA00007626}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; CM000763; EES06126.1; -; Genomic_DNA.
DR   RefSeq; XP_002453150.1; XM_002453105.1.
DR   AlphaFoldDB; C5XS65; -.
DR   STRING; 4558.C5XS65; -.
DR   EnsemblPlants; EES06126; EES06126; SORBI_3004G007700.
DR   GeneID; 8085185; -.
DR   Gramene; EES06126; EES06126; SORBI_3004G007700.
DR   KEGG; sbi:8085185; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_49_24_1; -.
DR   InParanoid; C5XS65; -.
DR   OMA; MIRRRPW; -.
DR   OrthoDB; 466167at2759; -.
DR   Proteomes; UP000000768; Chromosome 4.
DR   GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR   GO; GO:0009409; P:response to cold; IEA:EnsemblPlants.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 6.
DR   PANTHER; PTHR47932; ATPASE EXPRESSION PROTEIN 3; 1.
DR   PANTHER; PTHR47932:SF63; OS08G0290000 PROTEIN; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF12854; PPR_1; 1.
DR   Pfam; PF13041; PPR_2; 1.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 8.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          180..214
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          215..249
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          250..284
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          285..319
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          320..354
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          355..390
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          428..462
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          504..538
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          22..77
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   757 AA;  82706 MW;  774F58E1DB916E2C CRC64;
     MARRHLASTL HLPLLCRNPS APTSALCTSS STHEVPPPAV EAPPLPVQVP AEKPADEAAA
     AAVPSPSAPT NPPRREEPLH ETILHMIRRR PWTTRLENSI RLLSPTLDAP LVHGVISGAA
     SAGRAELALQ FFRFAYRRGG FRPDGDTFAL LVPALASRRM LNHARCLVLD TMPSFSVAPD
     EPTLAALISA YGRAAIPQEA VKLFRMMPDL GVPRTALSYN AVLKAILCRG REAMARRIYN
     AMIADGVAPD VSTYNTLIWG FGLCKKMETA VRVFGEMKGH GVTPDVTTYN ALLNAWVRTG
     DLESARKVFD EMTGKGIERN SVSYNVMIKG YVEGNRVEEA VALFAEMGEK GLRLSEKTFA
     ALMPGLCDDQ GRAAEARKAV DDMAERRLTP KDKSVFLRLV TTLCKAGDLD GALEVHRKSG
     QFKHVLVDPR QYGVLMEGLC AGGKSEMAIE VLDELMEKGT LLSPKSPVLE ASAYNPVIEH
     LCSNGSTTKA ETFFRQLMKK GVDDKAAFNS LIRGHAKEGV PEAAQEILAI MTRREVPTDP
     ESHVLLVDSF LKKNEPADAK TALDSMMQHG HLPSPALFKS VMEALFNDGR IQTASRVMKS
     MIEKGVTENM DMAHKILEAL FTRGHVEEAI GRVNLMVENG CMPDLDKLLV GLCDNDRVME
     AQKLADFALD RDFDVSFSTY DRVLEALYAE EKTLPAYSML CKIKNKGGVV DQKGCDALME
     SLKSEGYSKQ ADILSRILAE NSQSMSKRGG KKVAMGA
//
DBGET integrated database retrieval system