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Database: UniProt
Entry: C5YAZ0_SORBI
LinkDB: C5YAZ0_SORBI
Original site: C5YAZ0_SORBI 
ID   C5YAZ0_SORBI            Unreviewed;       553 AA.
AC   C5YAZ0;
DT   01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT   01-SEP-2009, sequence version 1.
DT   08-NOV-2023, entry version 71.
DE   RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=SORBI_3006G273900 {ECO:0000313|EMBL:EES13129.1};
OS   Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX   NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13129.1, ECO:0000313|Proteomes:UP000000768};
RN   [1] {ECO:0000313|EMBL:EES13129.1, ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=19189423; DOI=10.1038/nature07723;
RA   Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA   Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA   Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA   Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA   Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA   Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT   "The Sorghum bicolor genome and the diversification of grasses.";
RL   Nature 457:551-556(2009).
RN   [2] {ECO:0000313|EMBL:EES13129.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Paterson A., Mullet J., Bowers J., Bruggmann R., Dubchak I., Grimwood J.,
RA   Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA   Spannagl M., Tang H., Wang X., Wicker T., Bharti A., Chapman J., Feltus F.,
RA   Gowik U., Grigoriev I., Lyons E., Maher C., Martis M., Narechania A.,
RA   Otillar R., Penning B., Salamov A., Wang Y., Zhang L., Carpita N.,
RA   Freeling M., Gingle A., Hash C., Keller B., Klein P., Kresovich S.,
RA   Mccann M., Ming R., Peterson D., Rahman M., Ware D., Westhoff P., Mayer K.,
RA   Messing J., Sims D., Jenkins J., Shu S., Rokhsar D.;
RT   "WGS assembly of Sorghum bicolor.";
RL   Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Proteomes:UP000000768}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX   PubMed=29161754; DOI=10.1111/tpj.13781;
RA   McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA   Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA   Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT   "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT   a transcriptome atlas, and signatures of genome organization.";
RL   Plant J. 93:338-354(2018).
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DR   EMBL; CM000765; EES13129.1; -; Genomic_DNA.
DR   EMBL; CM000765; KXG27474.1; -; Genomic_DNA.
DR   EMBL; CM000765; KXG27475.1; -; Genomic_DNA.
DR   RefSeq; XP_002448801.1; XM_002448756.1.
DR   AlphaFoldDB; C5YAZ0; -.
DR   EnsemblPlants; EES13129; EES13129; SORBI_3006G273900.
DR   EnsemblPlants; KXG27474; KXG27474; SORBI_3006G273900.
DR   EnsemblPlants; KXG27475; KXG27475; SORBI_3006G273900.
DR   GeneID; 8076497; -.
DR   Gramene; EES13129; EES13129; SORBI_3006G273900.
DR   Gramene; KXG27474; KXG27474; SORBI_3006G273900.
DR   Gramene; KXG27475; KXG27475; SORBI_3006G273900.
DR   KEGG; sbi:8076497; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_0_6_1; -.
DR   InParanoid; C5YAZ0; -.
DR   OMA; VMILAHC; -.
DR   OrthoDB; 764438at2759; -.
DR   Proteomes; UP000000768; Chromosome 6.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR046960; PPR_At4g14850-like_plant.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR47926; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47926:SF339; UMP-CMP KINASE; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   PROSITE; PS51375; PPR; 2.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          226..260
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          327..361
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   553 AA;  60878 MW;  F5832F78B3CABA92 CRC64;
     MATTSTSPHS AGGGGIIGDD LHGLLRYGLR THSSVLCAHA FLLRRGLLLG HAVPAGLLLT
     ASACSAASPP AHILRLLHHL PPPLPVFSID LALRAVGPRI PFSTLLSLFA ALLRSHQPVF
     PDHFSFPPLL SAAASAASPR LHLRSALALH GQVLRRGLLF SPPPHAANAL LHFYATAGGL
     SSARYLFDEM PFRDIVSYNT LMTALASTPG GIDAARQLFE GMHLRSAVSW NIMINGYVKA
     KWPEQALEVV RWMAKAGVRG TAAAMVGAAT ACARLGRLGA GKEVHCVFLR RFEDDNLLVW
     TALIDMYGKC RRSGVARKLF DRLRMRNVVC WNAMIIGHCV YGEPGDGIKL FQHMITLGNV
     QPDGVTFIGV LCACARLGLL EDGRAYFEQM STVYNLKPTF AHYWCVANLY GSVGLLEEAE
     GLLQSIPEDM KARALGSLLG LCRFRKDWRL GERIALRLIE LEPSNNAHYA LLCNVYAAVG
     RWEEVHRVKA IMKGRDERFR PGHRLVNLNE IVDEFKIRES QPENQEIYAI MDDLATRLKL
     DCKEKDQSDF GIK
//
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