ID C5YE49_SORBI Unreviewed; 1069 AA.
AC C5YE49;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 24-JAN-2024, entry version 85.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EES12692.1};
GN ORFNames=SORBI_3006G184900 {ECO:0000313|EMBL:EES12692.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES12692.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES12692.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000765; EES12692.1; -; Genomic_DNA.
DR RefSeq; XP_002448364.1; XM_002448319.1.
DR AlphaFoldDB; C5YE49; -.
DR STRING; 4558.C5YE49; -.
DR EnsemblPlants; EES12692; EES12692; SORBI_3006G184900.
DR GeneID; 8060410; -.
DR Gramene; EES12692; EES12692; SORBI_3006G184900.
DR KEGG; sbi:8060410; -.
DR eggNOG; KOG2002; Eukaryota.
DR HOGENOM; CLU_006386_1_1_1; -.
DR InParanoid; C5YE49; -.
DR OMA; EHWLTIA; -.
DR OrthoDB; 3573659at2759; -.
DR Proteomes; UP000000768; Chromosome 6.
DR GO; GO:0016593; C:Cdc73/Paf1 complex; IBA:GO_Central.
DR GO; GO:0000993; F:RNA polymerase II complex binding; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR031101; Ctr9.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR013105; TPR_2.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR14027; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9; 1.
DR PANTHER; PTHR14027:SF2; RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 HOMOLOG; 1.
DR Pfam; PF13432; TPR_16; 1.
DR Pfam; PF07719; TPR_2; 1.
DR Pfam; PF13181; TPR_8; 3.
DR SMART; SM00028; TPR; 11.
DR SUPFAM; SSF81901; HCP-like; 1.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS50005; TPR; 4.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}.
FT REPEAT 207..240
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 352..385
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 386..419
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 722..755
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 908..1069
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 908..961
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1025..1055
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1069 AA; 122165 MW; 1B67E5533C95D5E4 CRC64;
MTSVYIPVQG TEEEVRVALD QLPHDASDIL DILKAEQAPL HLWLIIAREY FKQGKIEQFR
QILEEGSGPE IDEYYADVKY ERIAILNALG AFHTFLGKVD RAPQKESHFK DATQYYNRAS
RIDETEPSTW IGKGQLCVAK GELQMASDSF KIVLDEDGNN FPALLGQASV YFLMGEGEQQ
HKKSLEHYRN SLDLYKRALR VYSNCPAAVR LGIAFCRYKL GQVEKARQAF QRVLELDPQN
VDALVALAIM DLQTNEAGGI RSGMEKMKKA FEIYPYYTLA LNHLANHYFF TGQHFVVEQL
TETALSSSNH VLLKSHAYYN LARSYHSKGD IETAGRYYMA SVNEISKPQD FVLPYIGLGQ
IQLKFGDLKS SLGSFEKVLE VHPENCESLK AIGHIHAKSG ETEKAIETFK KVTRIDPKDH
QAFVELGELL VESDWAAAME YLKTARNLLK KAGEAVPVEL LNGIGLLHFE KGEFEMAEQS
FKEALGDGLW VSVMDGKVGS SMVNWSVQNK DQSFFHQLEE EGVPLELHSI KVTTLFNYAR
LLEELHDSVR ASLFYRFIIF KYPDYIDAYL RLAAIAKQRN NVQLSIELIG DALKIDEKNP
NALSMLGSLE LQSDETWLTA KEHFRSAKEA TKGDTYSLLQ LGNWNYFAAN RPEKKAPKIE
ATHREKAMEL YQSQVLKHHR SNMFAANGIG ILYAEKAKWD VAKELFTQVH EAASGSIFVH
MPDVWINLAH TYFAQGHFQQ AVKMYQNCLR KFFHNTDATI LLYLARTHYE AERWQDCRKT
LLRAIHLAPS NYLLRFNVGV SMQKFSASTL QKAKQTVDEV RATVTELQNA IRVFSLLSVA
STYHSHGFDE RKIETHVEYC KHLLNAAKVH RDAAEQAEQQ NKQKMEVARQ IALAEEARRR
AEEQRKFQLE RRREEDELKQ VKQQEEHFER VKEQWKTSSH TPGKRKDRSK TEDEEVGNEK
RRRKGIRRRK DQKTKMQYGE EEEDEYKDEP EADDDYADLA RYNGADNSEK APDHLLAAAG
LDDSDAEDDM GHPQSAIERK RRAWSESEDD EPVKKPAAPP SPGADGLSE
//
