ID C5YIF2_SORBI Unreviewed; 824 AA.
AC C5YIF2;
DT 01-SEP-2009, integrated into UniProtKB/TrEMBL.
DT 01-SEP-2009, sequence version 1.
DT 27-MAR-2024, entry version 69.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3007G071400 {ECO:0000313|EMBL:EES13496.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:EES13496.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:EES13496.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM000766; EES13496.1; -; Genomic_DNA.
DR RefSeq; XP_002444001.1; XM_002443956.1.
DR AlphaFoldDB; C5YIF2; -.
DR EnsemblPlants; EES13496; EES13496; SORBI_3007G071400.
DR GeneID; 8085027; -.
DR Gramene; EES13496; EES13496; SORBI_3007G071400.
DR KEGG; sbi:8085027; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_49_9_1; -.
DR InParanoid; C5YIF2; -.
DR OMA; MLNGYCR; -.
DR OrthoDB; 848162at2759; -.
DR Proteomes; UP000000768; Chromosome 7.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 12.
DR PANTHER; PTHR47941:SF37; OS01G0546700 PROTEIN; 1.
DR PANTHER; PTHR47941; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 2.
DR Pfam; PF13041; PPR_2; 6.
DR SUPFAM; SSF81901; HCP-like; 2.
DR PROSITE; PS51375; PPR; 12.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 222..256
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 298..332
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 333..367
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 403..437
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 438..472
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 473..507
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 508..542
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 578..612
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 613..643
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 647..681
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 733..767
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 768..802
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 824 AA; 93452 MW; D5D2906EA78AA567 CRC64;
MILSRWPKYT AEWFRHRKVF PWEVPSCPYS VLAASVQRDD SSGDERLSCA PFNEPIRKRQ
QSLSSDSVVQ ALRCLRRKPA VAFAYFKDIN SLGFHHDFST YSEIIQILSH SFQGKMLVAL
FCEILSSTGN GGPEILTLID HLSKTCATSH VLSYAVNCLI KAYTTSHDAQ ETVEMFCHLC
RLGFVPTLWA CNFLLKFVSQ SGDSDMVVRA YDRMKCFQLT LDTQSLNIVT RSFFEANKAD
EAFQVWVRMI EMGVKPDVHG YSSFIIGLCE CGKYDLAYNM VSRYAVLHEI IQERVAVESI
AYNMVIDGLC KEMKLEEAEK VLEIKTRHGS TPDLYGYSYL IRTYCKTGNL GKAWHHIEAM
VSHGIEINCY IVGYLLQCLK KLGMVSEVIV YFQKFRDLGL HLDGVLYNIT MDAYCKLGNM
NEAVKLLNEM MAGGLVPDKI HYTCLINGYC LKGETENAWQ VFEQMLKANI KPDVVTYNIL
ASGYSRNGAV IKVYDLLEHM VDQGLEPNSL TYGVAIACFC REGNLSEAEV LFNILEEKGI
DNIEVLYSSM VCGYLYSGWT DHAYTLFLRV AKQGNMVDNL SCSKLINSLC IDKKVEEAST
VCSMMLEKNA VPDVISYSKL ISAYCQKRDM HNAHLWFLDM VDRGLSDVIV YTVLMNGYCK
VGRLQEACDL FVQMINLGIK PDVVAYTVLL DGHIKEALHQ GWQGIAKEWR SFRLRTKHKT
LLSSMKDMEI EPDVTCYTVL IDGHCKTEYL DEARGLFDEM LAKGLTPDVY AYTALINGYC
SQGEIAKAED LLQEMTDNGM KPDVLTFSVL HQRTLRHRKA HSYL
//
